Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SUMO2P14-201ENST00000604488 293 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC100767.2-201ENST00000604840 693 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC093673.2-201ENST00000609674 331 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC245100.7-201ENST00000609678 442 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 VN1R9P-201ENST00000614184 867 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL355974.3-201ENST00000617383 467 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC026124.2-201ENST00000621847 656 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC105105.5-201ENST00000622635 1294 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 RBPJP7-201ENST00000442803 1447 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 RBPJP5-201ENST00000449433 1447 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC005224.3-201ENST00000584683 2140 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 SPATA2P1-201ENST00000431223 2055 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC023490.2-201ENST00000359859 470 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 RN7SKP78-201ENST00000364711 318 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC092642.1-201ENST00000392417 425 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AL121977.1-201ENST00000401636 979 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 GTF2IP5-201ENST00000414608 731 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 PCNPP4-201ENST00000414817 517 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 MTCYBP7-201ENST00000419540 1134 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AL034379.1-201ENST00000423216 253 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 SETP9-201ENST00000423837 832 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC092651.1-201ENST00000426110 312 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC245884.2-201ENST00000426257 404 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 USP24P1-201ENST00000433802 779 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 RPS7P3-201ENST00000443360 580 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC073109.1-201ENST00000445066 978 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AL358794.1-201ENST00000445689 381 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 LRRC37A14P-201ENST00000452297 462 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AL603882.1-201ENST00000463059 681 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 MTCO2P6-201ENST00000463134 685 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC008629.2-201ENST00000503783 483 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC093815.1-201ENST00000508637 280 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC099785.1-201ENST00000605697 437 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC009464.1-201ENST00000615731 469 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AL136228.1-201ENST00000622221 319 ntBASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
PTCHD3Q3KNS1 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 Z95114.1-201ENST00000624264 14574 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms