Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL356608.1-201ENST00000610034 820 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AC007786.3-201ENST00000615154 596 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AC016717.3-201ENST00000624730 554 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.07□□□□□ -1.6
COL5A1P20908 AC073869.8-201ENST00000641806 335 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.06□□□□□ -1.6
COL5A1P20908 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
COL5A1P20908 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
COL5A1P20908 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
COL5A1P20908 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
COL5A1P20908 MAPK10-263ENST00000641052 4307 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 RNA5SP428-201ENST00000365129 132 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 AL049693.1-201ENST00000402760 611 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 PPIAP9-201ENST00000403866 498 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.06□□□□□ -1.6
COL5A1P20908 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.06□□□□□ -1.6
COL5A1P20908 AC009963.4-201ENST00000448535 339 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 NUTF2P7-201ENST00000453086 375 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 RN7SL814P-201ENST00000487715 300 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 AC091912.1-201ENST00000511351 248 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 OR7E128P-201ENST00000532736 1024 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.06□□□□□ -1.6
COL5A1P20908 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.06□□□□□ -1.6
COL5A1P20908 AC068790.7-201ENST00000602347 528 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.06□□□□□ -1.6
COL5A1P20908 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.06□□□□□ -1.6
COL5A1P20908 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.06□□□□□ -1.6
COL5A1P20908 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 AC068870.1-201ENST00000563737 2455 ntBASIC5.06□□□□□ -1.6
COL5A1P20908 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL5A1P20908 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 SAMM50P1-201ENST00000455403 1399 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 SDAD1P1-202ENST00000524156 2051 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.05□□□□□ -1.6
COL5A1P20908 AC021876.1-201ENST00000425959 359 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 RPS27AP6-201ENST00000427962 448 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.05□□□□□ -1.6
COL5A1P20908 AL161722.2-201ENST00000434731 981 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.05□□□□□ -1.6
COL5A1P20908 REG1CP-206ENST00000447469 496 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 AP000797.2-201ENST00000475768 606 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 AC026979.1-201ENST00000492525 396 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 GAPDHP56-201ENST00000506031 988 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 OR7H2P-201ENST00000513483 306 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 OR4A17P-201ENST00000526032 904 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
COL5A1P20908 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.05□□□□□ -1.6
COL5A1P20908 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
COL5A1P20908 MIR5096-201ENST00000583713 70 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 AC093388.1-201ENST00000609166 430 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 AP003400.3-201ENST00000624904 346 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 UGT2B24P-201ENST00000514441 1597 ntBASIC5.05□□□□□ -1.6
COL5A1P20908 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
COL5A1P20908 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL5A1P20908 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL5A1P20908 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
COL5A1P20908 RNA5SP90-201ENST00000364801 99 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 RNU1-74P-201ENST00000384108 171 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL5A1P20908 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.04□□□□□ -1.6
COL5A1P20908 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.04□□□□□ -1.6
COL5A1P20908 RPL7P11-201ENST00000437586 658 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AC112498.1-201ENST00000444401 332 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AL354714.3-201ENST00000447284 493 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.04□□□□□ -1.6
COL5A1P20908 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.04□□□□□ -1.6
COL5A1P20908 RN7SL354P-201ENST00000469282 294 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 RPL7P40-201ENST00000481703 745 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms