Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AL022331.1-201ENST00000429025 477 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AC073109.1-201ENST00000445066 978 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 RN7SL174P-201ENST00000475578 289 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AC022826.1-201ENST00000519383 805 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AC092121.1-201ENST00000569452 202 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 LINC01963-201ENST00000562038 3148 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC112Q8NEF3 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC112Q8NEF3 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.9□□□□□ -1.47
CCDC112Q8NEF3 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.9□□□□□ -1.47
CCDC112Q8NEF3 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AC005261.2-201ENST00000593427 4258 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 SNORA64.1-201ENST00000362600 132 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 RN7SKP153-201ENST00000365026 316 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 OR2AH1P-201ENST00000425717 928 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 CDY8P-201ENST00000428380 1279 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 CDY20P-201ENST00000447528 1279 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 CST12P-201ENST00000457644 362 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AC022215.1-201ENST00000481770 362 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AC109464.1-201ENST00000511091 819 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 SNORD46.2-201ENST00000516021 102 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AL390726.5-202ENST00000564800 256 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AP000769.2-201ENST00000602344 396 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 MIR6768-201ENST00000610734 72 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AC037198.3-201ENST00000616754 526 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AP005431.1-201ENST00000618479 319 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AP000648.2-201ENST00000624182 404 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AP003400.3-201ENST00000624904 346 ntBASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC112Q8NEF3 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 CDY17P-201ENST00000414121 1282 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 AC011476.1-201ENST00000466725 307 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 AC093827.1-201ENST00000480094 861 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 RN7SL214P-201ENST00000487317 265 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 RN7SL346P-201ENST00000491561 294 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 RN7SL193P-201ENST00000491708 276 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 RN7SL101P-201ENST00000496350 279 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 PSMA2P2-201ENST00000504319 686 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 Y_RNA.667-201ENST00000516212 107 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 AC015871.5-202ENST00000623252 701 ntBASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
CCDC112Q8NEF3 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC112Q8NEF3 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC112Q8NEF3 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC112Q8NEF3 AL162456.1-201ENST00000634535 2006 ntBASIC5.87□□□□□ -1.47
CCDC112Q8NEF3 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC112Q8NEF3 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC112Q8NEF3 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC112Q8NEF3 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC112Q8NEF3 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms