Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 GABARAPL3-201ENST00000412799 354 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 REG1CP-206ENST00000447469 496 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC107015.1-201ENST00000466902 747 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 CBX1P5-201ENST00000475330 559 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 CR383656.1-201ENST00000484916 377 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 RN7SL97P-201ENST00000486780 299 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 RN7SKP66-201ENST00000516681 231 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC022832.1-201ENST00000530718 645 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 MIR4311-201ENST00000580794 100 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC012616.1-201ENST00000600294 197 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AL049539.1-201ENST00000611964 459 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AL139407.1-201ENST00000613826 1175 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 MTCO1P1-201ENST00000624263 1081 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC007938.2-201ENST00000604666 2634 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC125336.1-201ENST00000508893 2827 ntBASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HDDC3Q8N4P3 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC005294.1-201ENST00000355509 281 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 RN7SKP6-201ENST00000364795 319 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 MIR551A-201ENST00000385042 96 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 RNA5SP91-201ENST00000390902 119 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 RN7SKP273-201ENST00000411392 314 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 METTL15P3-201ENST00000415522 1221 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 FAR2P1-206ENST00000449736 709 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 RSU1P1-201ENST00000453416 441 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 RPS7P6-201ENST00000485777 579 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AP000919.1-201ENST00000582850 985 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 LINC01963-201ENST00000562038 3148 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 ZNF733P-202ENST00000444809 1573 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms