Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SEPT2P1-201ENST00000419651 180 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC241520.1-201ENST00000422654 1099 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC007568.1-201ENST00000422912 471 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 RPL5P2-201ENST00000429598 854 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 GAPDHP48-201ENST00000436626 961 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 XKRY2-201ENST00000442362 1093 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 RPL36AP39-201ENST00000445859 318 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AC023141.9-201ENST00000458734 412 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 RPSAP37-201ENST00000470913 821 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC126121.1-201ENST00000482313 553 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 RN7SL205P-201ENST00000490174 284 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AL136038.1-201ENST00000497246 351 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC138409.2-202ENST00000507274 458 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 MTCYBP16-201ENST00000509187 1129 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 Y_RNA.710-201ENST00000516975 110 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 NAT2-202ENST00000520116 716 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 WBP1LP3-201ENST00000523033 208 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.23□□□□□ -1.41
USP39Q53GS9 MTCYBP20-201ENST00000524239 1129 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC027544.3-201ENST00000535082 757 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.23□□□□□ -1.41
USP39Q53GS9 DUXAP6-201ENST00000553858 601 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC051619.2-201ENST00000559063 397 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AC103987.3-201ENST00000582071 292 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AC005244.1-201ENST00000582566 339 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AC068790.6-201ENST00000602558 258 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC009237.12-201ENST00000604755 742 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AL583856.2-201ENST00000606298 543 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AL352984.2-201ENST00000611153 546 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AL355073.2-201ENST00000612106 557 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC022467.1-201ENST00000614738 749 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC096708.4-201ENST00000620563 552 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AC017037.3-201ENST00000625016 472 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 CGA-206ENST00000630630 832 ntTSL 2 BASIC6.23□□□□□ -1.41
USP39Q53GS9 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.23□□□□□ -1.41
USP39Q53GS9 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.23□□□□□ -1.41
USP39Q53GS9 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 AL356473.1-201ENST00000406203 1408 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.23□□□□□ -1.41
USP39Q53GS9 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.22□□□□□ -1.41
USP39Q53GS9 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
USP39Q53GS9 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
USP39Q53GS9 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.22□□□□□ -1.41
USP39Q53GS9 AC119674.1-213ENST00000641177 1386 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 AC011815.2-201ENST00000618230 2021 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 RNU6-623P-201ENST00000363143 105 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 RN7SKP292-201ENST00000365522 317 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 SNORA70H-201ENST00000383910 135 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 SNORA70J-201ENST00000384182 135 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AL121978.1-201ENST00000402778 359 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 BTF3L4P1-201ENST00000413813 468 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC6.22□□□□□ -1.41
USP39Q53GS9 AL121776.1-201ENST00000429337 372 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 MTCYBP29-201ENST00000436327 1006 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 OR10R1P-201ENST00000441524 1141 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC6.22□□□□□ -1.41
USP39Q53GS9 ANKRD26P4-201ENST00000455755 950 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC6.22□□□□□ -1.41
USP39Q53GS9 AC110749.1-201ENST00000462007 357 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 CABYRP1-201ENST00000465493 1045 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms