Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TPT1P1-201ENST00000458495 518 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 ACA64.1-201ENST00000459171 127 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 TRBV5-2-201ENST00000489095 273 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 TOMM22P4-201ENST00000511318 336 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 Y_RNA.667-201ENST00000516212 107 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 MTND2P38-201ENST00000522536 667 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 EEF1A1P37-201ENST00000522748 715 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AP001804.2-201ENST00000533932 910 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AP005119.1-201ENST00000580956 292 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC108673.3-201ENST00000609183 335 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC103703.1-201ENST00000634783 663 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 NCOA4P2-201ENST00000340589 1813 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 GNL2P1-201ENST00000451274 2190 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL591135.1-201ENST00000401578 5914 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 HSPD1P11-201ENST00000508643 1702 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL161756.3-201ENST00000641216 2071 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC130304.1-201ENST00000622942 2385 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 RN7SKP74-201ENST00000362849 309 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 RNA5SP211-201ENST00000365516 117 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 MIR323B-201ENST00000385269 82 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 SLC20A1P1-201ENST00000413906 956 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 MTATP6P20-201ENST00000414147 562 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 BMS1P13-201ENST00000417301 885 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC008173.1-201ENST00000418901 264 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC099677.3-201ENST00000427081 395 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 MTND2P5-201ENST00000432656 1006 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 EIF2S2P2-201ENST00000447161 982 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 MTND6P5-201ENST00000448266 512 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL445466.1-201ENST00000448432 357 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 CFL1P4-201ENST00000451536 498 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 PPP1R11P1-201ENST00000486095 376 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 PSMA2P2-201ENST00000504319 686 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC105420.1-201ENST00000504389 582 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 RFESD-208ENST00000513950 464 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 RN7SKP287-201ENST00000516546 266 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 RNA5SP438-201ENST00000516561 112 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AP001207.2-201ENST00000519490 539 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 HAUS1P3-201ENST00000523909 662 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC139103.1-201ENST00000534696 1030 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL132857.1-201ENST00000555180 708 ntBASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD3Q3KNS1 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 165.2 ms