Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AF230666.2-201ENST00000602328 725 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 RN7SL544P-201ENST00000617232 284 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 RN7SL763P-201ENST00000620922 284 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AL137067.2-201ENST00000621202 131 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC012254.3-201ENST00000591183 2117 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AL359091.1-201ENST00000449048 1734 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 GTF2IP4-201ENST00000453092 2054 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC024587.1-201ENST00000505925 2157 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 RN7SKP128-201ENST00000364270 303 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 OR13C3-201ENST00000374781 1108 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 RNU6-40P-201ENST00000384254 107 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 SNORD65-201ENST00000391079 73 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 RPL35AP3-201ENST00000414680 288 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC007562.1-201ENST00000421819 517 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC091390.1-201ENST00000433904 331 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 ZNF736P1Y-201ENST00000440402 1276 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 SNRPFP2-201ENST00000440710 251 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC023274.2-201ENST00000445264 521 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC016550.3-201ENST00000515706 767 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC020937.1-201ENST00000519677 1013 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 OR1F2P-201ENST00000570470 933 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AP004372.1-201ENST00000604842 844 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AL355802.4-201ENST00000607635 548 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC092953.2-201ENST00000608000 699 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC133644.2-201ENST00000608142 540 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 RMST_5.1-201ENST00000618704 126 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 AC079298.2-201ENST00000623885 459 ntBASIC5.62□□□□□ -1.51
COL28A1Q2UY09 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
COL28A1Q2UY09 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC009804.1-201ENST00000400949 179 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 RPL26P29-201ENST00000415623 438 ntBASIC5.61□□□□□ -1.51
COL28A1Q2UY09 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms