Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC013470.3-201ENST00000420252 1194 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 RPS3P2-201ENST00000421346 701 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 RPS6P14-201ENST00000425165 719 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.91□□□□□ -1.46
HDAC4P56524 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.91□□□□□ -1.46
HDAC4P56524 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.91□□□□□ -1.46
HDAC4P56524 AC084754.1-201ENST00000463466 464 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AC074386.1-201ENST00000476560 767 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AC006518.1-201ENST00000541449 943 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.91□□□□□ -1.46
HDAC4P56524 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.91□□□□□ -1.46
HDAC4P56524 AC090607.5-201ENST00000615692 224 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AL391262.2-201ENST00000622466 494 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.91□□□□□ -1.46
HDAC4P56524 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.91□□□□□ -1.46
HDAC4P56524 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.91□□□□□ -1.46
HDAC4P56524 AC087565.3-203ENST00000641018 837 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.91□□□□□ -1.46
HDAC4P56524 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HDAC4P56524 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDAC4P56524 AC087565.3-202ENST00000642085 1603 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDAC4P56524 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.91□□□□□ -1.46
HDAC4P56524 CASC19-248ENST00000641674 1356 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDAC4P56524 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.91□□□□□ -1.46
HDAC4P56524 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.9□□□□□ -1.46
HDAC4P56524 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HDAC4P56524 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HDAC4P56524 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.9□□□□□ -1.46
HDAC4P56524 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.9□□□□□ -1.46
HDAC4P56524 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
HDAC4P56524 AC023490.2-201ENST00000359859 470 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AL672167.2-201ENST00000377164 879 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AC005042.1-201ENST00000393397 800 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 RN7SKP229-201ENST00000410465 302 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 RPS6P23-201ENST00000413224 722 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 IPPKP1-201ENST00000422501 768 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.9□□□□□ -1.46
HDAC4P56524 SDR42E1P3-201ENST00000438345 502 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AL391987.1-201ENST00000441025 200 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.9□□□□□ -1.46
HDAC4P56524 RPS23P9-201ENST00000448848 438 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AL445665.1-202ENST00000452436 324 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 SEPT7P3-201ENST00000455017 621 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.9□□□□□ -1.46
HDAC4P56524 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HDAC4P56524 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HDAC4P56524 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.9□□□□□ -1.46
HDAC4P56524 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.9□□□□□ -1.46
HDAC4P56524 GAPDHP62-201ENST00000515313 990 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.9□□□□□ -1.46
HDAC4P56524 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.9□□□□□ -1.46
HDAC4P56524 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.9□□□□□ -1.46
HDAC4P56524 AC009852.2-201ENST00000567898 485 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 AC073111.2-201ENST00000605657 1075 ntBASIC5.9□□□□□ -1.46
HDAC4P56524 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HDAC4P56524 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.9□□□□□ -1.46
HDAC4P56524 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HDAC4P56524 AC003985.2-201ENST00000562268 1669 ntBASIC5.9□□□□□ -1.47
HDAC4P56524 PWAR1-201ENST00000624188 2414 ntBASIC5.9□□□□□ -1.47
HDAC4P56524 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HDAC4P56524 AC026523.2-201ENST00000625039 7739 ntBASIC5.9□□□□□ -1.47
HDAC4P56524 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HDAC4P56524 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
HDAC4P56524 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HDAC4P56524 AL034546.1-201ENST00000623740 3693 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDAC4P56524 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.89□□□□□ -1.47
HDAC4P56524 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
HDAC4P56524 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDAC4P56524 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.89□□□□□ -1.47
HDAC4P56524 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.89□□□□□ -1.47
HDAC4P56524 AC005005.4-201ENST00000623789 16698 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDAC4P56524 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDAC4P56524 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDAC4P56524 GAPDHP24-201ENST00000328713 983 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
HDAC4P56524 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.89□□□□□ -1.47
HDAC4P56524 OR6K3-202ENST00000368146 996 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDAC4P56524 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
HDAC4P56524 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.89□□□□□ -1.47
HDAC4P56524 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.89□□□□□ -1.47
HDAC4P56524 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.89□□□□□ -1.47
HDAC4P56524 PTP4A1P1-201ENST00000420539 515 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.89□□□□□ -1.47
HDAC4P56524 AC093155.2-201ENST00000420734 937 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 CLUHP1-201ENST00000435012 1190 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.89□□□□□ -1.47
HDAC4P56524 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.89□□□□□ -1.47
HDAC4P56524 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDAC4P56524 CYCSP53-201ENST00000455540 265 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 MTND6P32-201ENST00000457611 483 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 OR7E157P-201ENST00000494376 911 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 PSMA2P2-201ENST00000504319 686 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 DUTP7-201ENST00000507982 486 ntBASIC5.89□□□□□ -1.47
HDAC4P56524 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms