Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
HOXC9P31274 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.92□□□□□ -1.3
HOXC9P31274 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.92□□□□□ -1.3
HOXC9P31274 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 MFSD8-216ENST00000641147 4009 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.92□□□□□ -1.3
HOXC9P31274 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.92□□□□□ -1.3
HOXC9P31274 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.92□□□□□ -1.3
HOXC9P31274 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.92□□□□□ -1.3
HOXC9P31274 AC093827.1-201ENST00000480094 861 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 IGBP1P4-201ENST00000503202 879 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.92□□□□□ -1.3
HOXC9P31274 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.92□□□□□ -1.3
HOXC9P31274 OR7H2P-201ENST00000513483 306 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 OR7E128P-201ENST00000532736 1024 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.92□□□□□ -1.3
HOXC9P31274 ELOCP28-201ENST00000590044 317 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.92□□□□□ -1.3
HOXC9P31274 AC087283.1-201ENST00000604029 1074 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 AL031320.1-201ENST00000604177 357 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 MIR6810-201ENST00000622701 70 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 AP004289.1-201ENST00000436307 2205 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 MTND5P12-201ENST00000502851 1449 ntBASIC6.92□□□□□ -1.3
HOXC9P31274 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.92□□□□□ -1.3
HOXC9P31274 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.92□□□□□ -1.3
HOXC9P31274 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC6.91□□□□□ -1.3
HOXC9P31274 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 AC138907.8-201ENST00000623981 2256 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 FAR2P2-201ENST00000413041 594 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 FAR2P4-202ENST00000425399 584 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 HMGB1P32-201ENST00000425971 565 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC6.91□□□□□ -1.3
HOXC9P31274 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 COX6B1P5-201ENST00000509843 249 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 HMGN1P9-201ENST00000515212 298 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 RN7SKP67-201ENST00000515905 235 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 RNA5SP43-201ENST00000516559 110 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 GCSHP4-201ENST00000538792 439 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 BNIP3P1-201ENST00000547295 580 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 AC063949.1-201ENST00000552900 865 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.91□□□□□ -1.3
HOXC9P31274 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC6.91□□□□□ -1.3
HOXC9P31274 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC6.91□□□□□ -1.3
HOXC9P31274 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.91□□□□□ -1.3
HOXC9P31274 AC239868.2-201ENST00000564237 4527 ntBASIC6.91□□□□□ -1.3
HOXC9P31274 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HOXC9P31274 AC079298.1-201ENST00000625026 1619 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.9□□□□□ -1.3
HOXC9P31274 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.3
HOXC9P31274 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.9□□□□□ -1.3
HOXC9P31274 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HOXC9P31274 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HOXC9P31274 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.9□□□□□ -1.3
HOXC9P31274 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HOXC9P31274 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HOXC9P31274 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.9□□□□□ -1.3
HOXC9P31274 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.9□□□□□ -1.3
HOXC9P31274 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.9□□□□□ -1.3
HOXC9P31274 GYG1P1-201ENST00000460864 698 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 RPL7P41-201ENST00000485823 957 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 AC140172.1-201ENST00000502928 141 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.9□□□□□ -1.3
HOXC9P31274 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.9□□□□□ -1.3
HOXC9P31274 OR4A6P-201ENST00000534364 970 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 EDDM3DP-201ENST00000554692 434 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 AC079075.1-201ENST00000559543 878 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 MIR4737-201ENST00000583979 81 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 AP001357.1-201ENST00000586304 1053 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 AC105254.2-201ENST00000603636 436 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 MIR7703-201ENST00000620784 77 ntBASIC6.9□□□□□ -1.3
HOXC9P31274 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC6.9□□□□□ -1.3
HOXC9P31274 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HOXC9P31274 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HOXC9P31274 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HOXC9P31274 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
HOXC9P31274 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 284.5 ms