Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC019322.1-201ENST00000571869 389 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AL592148.3-201ENST00000608771 2646 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
COL5A3P25940 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 AL355488.2-201ENST00000609909 2850 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL5A3P25940 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
COL5A3P25940 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL5A3P25940 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
COL5A3P25940 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.42□□□□□ -1.38
COL5A3P25940 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 AC114755.2-201ENST00000413520 361 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 OR5M12P-201ENST00000423388 929 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AC090018.1-201ENST00000434369 367 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AC234781.3-201ENST00000452540 973 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AL356390.1-201ENST00000455684 397 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AC068587.1-201ENST00000483613 781 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 RN7SL441P-201ENST00000492388 296 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.42□□□□□ -1.38
COL5A3P25940 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.42□□□□□ -1.38
COL5A3P25940 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
COL5A3P25940 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.42□□□□□ -1.38
COL5A3P25940 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL5A3P25940 AL034374.2-201ENST00000605281 548 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 MIR6839-201ENST00000620425 113 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AC091932.2-201ENST00000623014 291 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AL034408.1-201ENST00000637712 664 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL5A3P25940 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.42□□□□□ -1.38
COL5A3P25940 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.41□□□□□ -1.38
COL5A3P25940 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A3P25940 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL5A3P25940 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.41□□□□□ -1.38
COL5A3P25940 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A3P25940 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A3P25940 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC6.41□□□□□ -1.38
COL5A3P25940 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A3P25940 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A3P25940 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL5A3P25940 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.41□□□□□ -1.38
COL5A3P25940 SNORA70F-201ENST00000384142 135 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC6.41□□□□□ -1.38
COL5A3P25940 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A3P25940 RPS3AP23-201ENST00000401762 784 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.41□□□□□ -1.38
COL5A3P25940 RSL24D1P6-201ENST00000426934 401 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 AC068287.1-201ENST00000430283 295 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.41□□□□□ -1.38
COL5A3P25940 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A3P25940 ZNF812P-201ENST00000457674 1694 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.41□□□□□ -1.38
COL5A3P25940 RN7SL443P-201ENST00000464331 290 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 AC013356.1-201ENST00000489027 564 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL5A3P25940 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.41□□□□□ -1.38
COL5A3P25940 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.41□□□□□ -1.38
COL5A3P25940 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.41□□□□□ -1.38
COL5A3P25940 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.41□□□□□ -1.38
COL5A3P25940 AC012339.2-201ENST00000523996 453 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.41□□□□□ -1.38
COL5A3P25940 MIR4277-201ENST00000578298 84 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
COL5A3P25940 AL138960.1-201ENST00000613838 513 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 AC019206.1-201ENST00000621938 425 ntBASIC6.41□□□□□ -1.38
COL5A3P25940 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.4□□□□□ -1.38
COL5A3P25940 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL5A3P25940 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.4□□□□□ -1.38
COL5A3P25940 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.4□□□□□ -1.38
COL5A3P25940 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
COL5A3P25940 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL5A3P25940 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL5A3P25940 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
COL5A3P25940 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.4□□□□□ -1.38
COL5A3P25940 RN7SKP145-201ENST00000363291 303 ntBASIC6.4□□□□□ -1.38
COL5A3P25940 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL5A3P25940 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.4□□□□□ -1.38
COL5A3P25940 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.4□□□□□ -1.38
COL5A3P25940 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC6.4□□□□□ -1.38
COL5A3P25940 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL5A3P25940 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.4□□□□□ -1.39
COL5A3P25940 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A3P25940 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A3P25940 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.39
COL5A3P25940 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.4□□□□□ -1.39
COL5A3P25940 MAPK10-270ENST00000641102 3538 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL5A3P25940 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.39□□□□□ -1.39
COL5A3P25940 RPL32P3-201ENST00000359025 275 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 SNORA62-201ENST00000365493 153 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 MIR589-201ENST00000385238 99 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms