Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RPL21P67-201ENST00000402896 478 ntBASIC5.05□□□□□ -1.6
SDC1P18827 AL358178.1-201ENST00000407698 397 ntBASIC5.05□□□□□ -1.6
SDC1P18827 AL035696.2-201ENST00000407941 709 ntBASIC5.05□□□□□ -1.6
SDC1P18827 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDC1P18827 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.05□□□□□ -1.6
SDC1P18827 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.05□□□□□ -1.6
SDC1P18827 TPTE2P1-204ENST00000435256 593 ntBASIC5.05□□□□□ -1.6
SDC1P18827 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.05□□□□□ -1.6
SDC1P18827 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.05□□□□□ -1.6
SDC1P18827 HMGN1P36-201ENST00000446623 298 ntBASIC5.05□□□□□ -1.6
SDC1P18827 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.05□□□□□ -1.6
SDC1P18827 AC104634.1-201ENST00000452720 462 ntBASIC5.05□□□□□ -1.6
SDC1P18827 DNAJB5P1-201ENST00000454004 806 ntBASIC5.05□□□□□ -1.6
SDC1P18827 RANP1-206ENST00000455094 651 ntBASIC5.05□□□□□ -1.6
SDC1P18827 TRBV8-1-201ENST00000481590 279 ntBASIC5.05□□□□□ -1.6
SDC1P18827 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.05□□□□□ -1.6
SDC1P18827 RNU4-18P-201ENST00000516751 149 ntBASIC5.05□□□□□ -1.6
SDC1P18827 RNU6-943P-201ENST00000516960 98 ntBASIC5.05□□□□□ -1.6
SDC1P18827 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.05□□□□□ -1.6
SDC1P18827 AC100784.1-201ENST00000522790 310 ntBASIC5.05□□□□□ -1.6
SDC1P18827 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.05□□□□□ -1.6
SDC1P18827 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.05□□□□□ -1.6
SDC1P18827 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.05□□□□□ -1.6
SDC1P18827 AC010547.7-201ENST00000570323 333 ntBASIC5.05□□□□□ -1.6
SDC1P18827 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.05□□□□□ -1.6
SDC1P18827 RBM22P1-201ENST00000578589 1214 ntBASIC5.05□□□□□ -1.6
SDC1P18827 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.05□□□□□ -1.6
SDC1P18827 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.05□□□□□ -1.6
SDC1P18827 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.05□□□□□ -1.6
SDC1P18827 AC005252.1-201ENST00000604518 1063 ntBASIC5.05□□□□□ -1.6
SDC1P18827 AL162431.4-201ENST00000604674 411 ntBASIC5.05□□□□□ -1.6
SDC1P18827 AC008833.1-201ENST00000611633 691 ntBASIC5.05□□□□□ -1.6
SDC1P18827 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.05□□□□□ -1.6
SDC1P18827 MIR1910-201ENST00000636955 80 ntBASIC5.05□□□□□ -1.6
SDC1P18827 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.05□□□□□ -1.6
SDC1P18827 AC011755.1-201ENST00000623763 2049 ntBASIC5.05□□□□□ -1.6
SDC1P18827 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDC1P18827 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.05□□□□□ -1.6
SDC1P18827 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDC1P18827 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
SDC1P18827 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDC1P18827 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDC1P18827 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.04□□□□□ -1.6
SDC1P18827 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.04□□□□□ -1.6
SDC1P18827 AC006210.2-201ENST00000367074 1545 ntBASIC5.04□□□□□ -1.6
SDC1P18827 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDC1P18827 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDC1P18827 AC005294.1-201ENST00000355509 281 ntBASIC5.04□□□□□ -1.6
SDC1P18827 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.04□□□□□ -1.6
SDC1P18827 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.04□□□□□ -1.6
SDC1P18827 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.04□□□□□ -1.6
SDC1P18827 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.04□□□□□ -1.6
SDC1P18827 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.04□□□□□ -1.6
SDC1P18827 RNA5SP487-201ENST00000410186 122 ntBASIC5.04□□□□□ -1.6
SDC1P18827 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.04□□□□□ -1.6
SDC1P18827 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.04□□□□□ -1.6
SDC1P18827 SDHDP6-201ENST00000414693 480 ntBASIC5.04□□□□□ -1.6
SDC1P18827 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.04□□□□□ -1.6
SDC1P18827 AC046176.1-201ENST00000435260 1170 ntBASIC5.04□□□□□ -1.6
SDC1P18827 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.04□□□□□ -1.6
SDC1P18827 AC073909.1-201ENST00000447112 999 ntBASIC5.04□□□□□ -1.6
SDC1P18827 AC245028.2-201ENST00000458673 253 ntBASIC5.04□□□□□ -1.6
SDC1P18827 AC108161.1-201ENST00000461060 402 ntBASIC5.04□□□□□ -1.6
SDC1P18827 AC021660.1-201ENST00000465006 554 ntBASIC5.04□□□□□ -1.6
SDC1P18827 RN7SL51P-201ENST00000468230 285 ntBASIC5.04□□□□□ -1.6
SDC1P18827 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDC1P18827 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.04□□□□□ -1.6
SDC1P18827 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.04□□□□□ -1.6
SDC1P18827 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.04□□□□□ -1.6
SDC1P18827 AC112191.2-201ENST00000522428 333 ntBASIC5.04□□□□□ -1.6
SDC1P18827 AC025857.1-201ENST00000525252 377 ntBASIC5.04□□□□□ -1.6
SDC1P18827 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.04□□□□□ -1.6
SDC1P18827 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SDC1P18827 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.04□□□□□ -1.6
SDC1P18827 RN7SL708P-201ENST00000580952 299 ntBASIC5.04□□□□□ -1.6
SDC1P18827 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.04□□□□□ -1.6
SDC1P18827 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.04□□□□□ -1.6
SDC1P18827 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.04□□□□□ -1.6
SDC1P18827 SNORA35B-201ENST00000607417 129 ntBASIC5.04□□□□□ -1.6
SDC1P18827 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDC1P18827 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.04□□□□□ -1.6
SDC1P18827 AC006484.1-201ENST00000435086 1884 ntBASIC5.04□□□□□ -1.6
SDC1P18827 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.04□□□□□ -1.6
SDC1P18827 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDC1P18827 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.04□□□□□ -1.6
SDC1P18827 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 AL513548.1-201ENST00000562904 1724 ntBASIC5.03□□□□□ -1.6
SDC1P18827 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.03□□□□□ -1.6
SDC1P18827 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 RNA5SP319-201ENST00000362768 119 ntBASIC5.03□□□□□ -1.6
SDC1P18827 RNA5SP335-201ENST00000363817 110 ntBASIC5.03□□□□□ -1.6
SDC1P18827 HSPA8P15-201ENST00000401676 786 ntBASIC5.03□□□□□ -1.6
SDC1P18827 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.03□□□□□ -1.6
SDC1P18827 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 CLUHP1-201ENST00000435012 1190 ntBASIC5.03□□□□□ -1.6
SDC1P18827 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms