Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RPL31P44-201ENST00000447680 377 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGA1P17096 snoU13.20-201ENST00000459180 104 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 RPS3AP41-201ENST00000462701 778 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 RN7SL197P-201ENST00000466981 299 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 RN7SL189P-201ENST00000468631 289 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGA1P17096 RN7SL814P-201ENST00000487715 300 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 AC022133.1-201ENST00000490961 571 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 RN7SL591P-201ENST00000496150 292 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGA1P17096 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGA1P17096 BRD9P1-201ENST00000529855 560 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.4□□□□□ -1.54
HMGA1P17096 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.4□□□□□ -1.54
HMGA1P17096 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGA1P17096 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGA1P17096 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HMGA1P17096 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGA1P17096 AC087783.2-201ENST00000605070 562 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 FAM25E-202ENST00000608562 189 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.4□□□□□ -1.54
HMGA1P17096 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGA1P17096 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGA1P17096 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
HMGA1P17096 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGA1P17096 AL137058.3-201ENST00000624531 3099 ntBASIC5.4□□□□□ -1.55
HMGA1P17096 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HMGA1P17096 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGA1P17096 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGA1P17096 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGA1P17096 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGA1P17096 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
HMGA1P17096 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGA1P17096 AC006210.2-201ENST00000367074 1545 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HMGA1P17096 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HMGA1P17096 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGA1P17096 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGA1P17096 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGA1P17096 AC016772.1-201ENST00000444170 1261 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 SUMO2P1-206ENST00000445436 284 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 AC023271.1-201ENST00000445936 1090 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 AC090804.1-201ENST00000448870 490 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 RPS12P31-201ENST00000491419 398 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 AC105233.1-201ENST00000498840 781 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 RN7SKP260-201ENST00000516907 149 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGA1P17096 AC005000.1-201ENST00000536192 288 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 AC008033.2-201ENST00000542626 177 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGA1P17096 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGA1P17096 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGA1P17096 AC233699.1-201ENST00000569955 1168 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 MIR3934-201ENST00000579806 107 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.39□□□□□ -1.55
HMGA1P17096 AC087385.3-201ENST00000620477 187 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 AP001153.1-201ENST00000641024 338 ntBASIC5.39□□□□□ -1.55
HMGA1P17096 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGA1P17096 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
HMGA1P17096 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGA1P17096 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGA1P17096 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
HMGA1P17096 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.38□□□□□ -1.55
HMGA1P17096 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HMGA1P17096 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HMGA1P17096 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
HMGA1P17096 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGA1P17096 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGA1P17096 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HMGA1P17096 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HMGA1P17096 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.38□□□□□ -1.55
HMGA1P17096 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.38□□□□□ -1.55
HMGA1P17096 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HMGA1P17096 RN7SKP95-201ENST00000362860 303 ntBASIC5.38□□□□□ -1.55
HMGA1P17096 AC009784.1-201ENST00000426484 460 ntBASIC5.38□□□□□ -1.55
HMGA1P17096 AC104837.2-201ENST00000427236 424 ntBASIC5.38□□□□□ -1.55
HMGA1P17096 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGA1P17096 REG1CP-206ENST00000447469 496 ntBASIC5.38□□□□□ -1.55
HMGA1P17096 RPS3AP53-201ENST00000454716 778 ntBASIC5.38□□□□□ -1.55
HMGA1P17096 COX6B1P2-201ENST00000489624 230 ntBASIC5.38□□□□□ -1.55
HMGA1P17096 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
HMGA1P17096 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGA1P17096 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.38□□□□□ -1.55
HMGA1P17096 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGA1P17096 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGA1P17096 OR7E128P-201ENST00000532736 1024 ntBASIC5.38□□□□□ -1.55
HMGA1P17096 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.38□□□□□ -1.55
HMGA1P17096 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 146.3 ms