Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
COL3A1P02461 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL3A1P02461 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
COL3A1P02461 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.85□□□□□ -1.31
COL3A1P02461 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 NPM1P10-201ENST00000398310 865 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.85□□□□□ -1.31
COL3A1P02461 AL078599.1-201ENST00000402075 293 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.85□□□□□ -1.31
COL3A1P02461 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 AL161722.2-201ENST00000434731 981 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 RPS29P10-201ENST00000439197 166 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 RPL12P3-201ENST00000440080 396 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 PRPF38AP1-201ENST00000451976 933 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 RPS17P2-201ENST00000461663 408 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 RN7SL610P-201ENST00000463845 291 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 SNORA48.9-201ENST00000516419 162 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 EIF4A2P5-201ENST00000529914 499 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 OR5D15P-201ENST00000531671 942 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 AC100814.1-201ENST00000606963 623 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 AC112694.2-201ENST00000623697 768 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 AC106730.3-201ENST00000624568 641 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 THAP12P4-201ENST00000528321 2266 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
COL3A1P02461 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
COL3A1P02461 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 RNA5SP428-201ENST00000365129 132 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 SNORA48.4-201ENST00000391089 134 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 RN7SKP114-201ENST00000410327 279 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 RPL12P9-201ENST00000412942 488 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 RPS29P9-201ENST00000440360 171 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 MORF4L1P4-201ENST00000450245 976 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 RPL35AP28-201ENST00000459730 331 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 RPS23P1-201ENST00000491662 432 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 CAB39P1-201ENST00000502277 460 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL3A1P02461 RN7SKP147-201ENST00000517154 244 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC6.85□□□□□ -1.31
COL3A1P02461 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC6.85□□□□□ -1.31
COL3A1P02461 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC6.85□□□□□ -1.31
COL3A1P02461 AP002371.2-201ENST00000624450 503 ntBASIC6.85□□□□□ -1.31
COL3A1P02461 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.85□□□□□ -1.31
COL3A1P02461 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL3A1P02461 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.84□□□□□ -1.31
COL3A1P02461 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 AL137058.3-201ENST00000624531 3099 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL3A1P02461 RNA5SP87-201ENST00000384155 118 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 RANP7-201ENST00000418085 644 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC6.84□□□□□ -1.31
COL3A1P02461 RPL7P11-201ENST00000437586 658 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 AL354714.3-201ENST00000447284 493 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 GAPDHP14-201ENST00000450472 937 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 RN7SL189P-201ENST00000468631 289 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 RPL7P40-201ENST00000481703 745 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.84□□□□□ -1.31
COL3A1P02461 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.84□□□□□ -1.31
COL3A1P02461 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.31
COL3A1P02461 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 RNA5SP392-201ENST00000516905 112 ntBASIC6.84□□□□□ -1.31
COL3A1P02461 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms