Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 SDAD1P1-202ENST00000524156 2051 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 HSPA8P15-201ENST00000401676 786 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC234779.1-201ENST00000425910 285 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC073465.2-201ENST00000440938 498 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC005412.2-201ENST00000492004 341 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 MIR4298-201ENST00000584380 73 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC105254.2-201ENST00000603636 436 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 BNIP3P11-201ENST00000603878 563 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 SNORA70.4-201ENST00000365509 134 ntBASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 AL359837.1-201ENST00000381357 287 ntBASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 RSU1P3-201ENST00000412878 835 ntBASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 MORF4L1P3-201ENST00000525966 950 ntBASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 AC019193.2-201ENST00000610012 634 ntBASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 CR381572.2-201ENST00000624852 397 ntBASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SHANK3Q9BYB0 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
SHANK3Q9BYB0 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
SHANK3Q9BYB0 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 AC010350.1-201ENST00000504908 231 ntBASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 AL031123.3-201ENST00000623345 1837 ntBASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 AL117378.2-201ENST00000622916 1337 ntBASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SHANK3Q9BYB0 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 SNORA66-201ENST00000384792 133 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC007559.1-201ENST00000428736 355 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC009643.1-201ENST00000532030 391 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC008785.1-201ENST00000624475 456 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 RPS29P10-201ENST00000439197 166 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC020890.1-201ENST00000491837 504 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC083829.1-201ENST00000503756 657 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC008147.3-201ENST00000548666 354 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC084824.1-201ENST00000550917 1005 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AC034105.4-201ENST00000568304 277 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 MIR4429-201ENST00000580105 73 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AL512782.1-201ENST00000603093 364 ntBASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.7□□□□□ -1.34
SHANK3Q9BYB0 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms