Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AL022322.2-201ENST00000624072 20397 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 DDX6P1-205ENST00000441966 1436 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NKX3-1Q99801 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NKX3-1Q99801 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC093591.2-201ENST00000565254 3843 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NKX3-1Q99801 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 SUGT1P2-201ENST00000379452 992 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NKX3-1Q99801 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 NIFKP3-201ENST00000417799 865 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 RNGTTP1-201ENST00000420965 728 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 OR10T1P-201ENST00000424327 947 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC126120.1-201ENST00000431082 470 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NKX3-1Q99801 RN7SL193P-201ENST00000491708 276 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AK4P6-201ENST00000505168 528 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC114781.3-201ENST00000512083 142 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 WBP1LP3-201ENST00000523033 208 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 TRIM77BP-201ENST00000524985 1119 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 TRIM51DP-201ENST00000529746 596 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 RPA2P1-201ENST00000556557 721 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 HMGB1P51-201ENST00000605166 638 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 NANOGP3-201ENST00000605855 286 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC012213.4-201ENST00000606457 354 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AL512506.1-201ENST00000613918 449 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AL356490.1-201ENST00000623079 479 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NKX3-1Q99801 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
NKX3-1Q99801 AC007342.5-201ENST00000571340 2142 ntBASIC4.87□□□□□ -1.63
NKX3-1Q99801 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AL159987.1-201ENST00000347911 293 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC009784.1-201ENST00000426484 460 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 TMEM183AP1-205ENST00000432739 290 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 RPL12P18-201ENST00000437175 325 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC016724.1-201ENST00000453215 421 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 RPS23P2-201ENST00000463671 415 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 RPSAP37-201ENST00000470913 821 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AL121839.1-201ENST00000556233 1185 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AGGF1P7-201ENST00000562369 913 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC005244.1-201ENST00000582566 339 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 451.3 ms