Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC111000.6-201ENST00000514471 709 ntBASIC5.58□□□□□ -1.52
VMP1Q96GC9 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.58□□□□□ -1.52
VMP1Q96GC9 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VMP1Q96GC9 AP004609.2-201ENST00000532177 190 ntBASIC5.58□□□□□ -1.52
VMP1Q96GC9 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 AC074029.2-201ENST00000551045 634 ntBASIC5.58□□□□□ -1.52
VMP1Q96GC9 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 MIR6809-201ENST00000612189 116 ntBASIC5.58□□□□□ -1.52
VMP1Q96GC9 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VMP1Q96GC9 AC015908.5-201ENST00000623289 343 ntBASIC5.58□□□□□ -1.52
VMP1Q96GC9 AC005618.4-201ENST00000625053 554 ntBASIC5.58□□□□□ -1.52
VMP1Q96GC9 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VMP1Q96GC9 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VMP1Q96GC9 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.58□□□□□ -1.52
VMP1Q96GC9 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AL158152.1-201ENST00000602652 1435 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC002525.1-201ENST00000624392 1622 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 RNA5SP273-201ENST00000362484 113 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 RN7SKP128-201ENST00000364270 303 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 RNU6-152P-201ENST00000384037 107 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 AMZ2P2-201ENST00000406819 1057 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 MYL6P5-201ENST00000412707 459 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 RPL35AP3-201ENST00000414680 288 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 MTCO1P57-201ENST00000432182 261 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 BMS1P10-201ENST00000443754 1120 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 AL353898.1-201ENST00000444055 238 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 PTMAP3-201ENST00000447474 330 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 GEMIN2P1-201ENST00000454246 752 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 TAAR4P-201ENST00000454843 1039 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 PSMC1P13-201ENST00000458195 985 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AL122020.1-201ENST00000472287 459 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 RN7SL193P-201ENST00000491708 276 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 Y_RNA.667-201ENST00000516212 107 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 MIR132-201ENST00000591554 101 ntBASIC5.57□□□□□ -1.52
VMP1Q96GC9 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.57□□□□□ -1.52
VMP1Q96GC9 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VMP1Q96GC9 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC009313.2-201ENST00000417893 1941 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms