Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 MIR6133-201ENST00000617057 108 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC026124.2-201ENST00000621847 656 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 CU639417.4-201ENST00000623928 207 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 SAMMSON-227ENST00000642114 1199 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SKA3Q8IX90 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SKA3Q8IX90 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC083843.2-201ENST00000568248 6253 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SKA3Q8IX90 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SKA3Q8IX90 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC007342.5-201ENST00000571340 2142 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 CDY11P-201ENST00000447168 1651 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC025574.1-201ENST00000554784 1653 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 RPSAP35-201ENST00000413753 818 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC007161.1-204ENST00000423039 460 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 RPL12P11-201ENST00000439970 501 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 TPT1P1-201ENST00000458495 518 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 UGT2A3P7-201ENST00000510485 734 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC106730.2-201ENST00000566641 540 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 RBM22P12-201ENST00000567098 1255 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 AL162574.1-201ENST00000615702 950 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC126175.1-201ENST00000617041 758 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 AC007683.2-201ENST00000624681 714 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 CASC19-255ENST00000641733 1385 ntBASIC4.87□□□□□ -1.63
SKA3Q8IX90 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
SKA3Q8IX90 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SKA3Q8IX90 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AL360270.2-201ENST00000562952 5985 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AFP-201ENST00000226359 1914 ntTSL 5 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 RN7SKP6-201ENST00000364795 319 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 MIR551A-201ENST00000385042 96 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 TNPO1P1-201ENST00000423641 1138 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 RIMKLBP2-201ENST00000424737 654 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 OR6D1P-201ENST00000436165 939 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 AP000281.1-201ENST00000444036 316 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 LINC02210-201ENST00000444561 288 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AZGP1P2-201ENST00000454506 345 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 RPS27AP2-201ENST00000457576 465 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 RN7SL583P-201ENST00000475692 287 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 RN7SL273P-201ENST00000481561 299 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 RN7SL591P-201ENST00000496150 292 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AC060766.1-201ENST00000590824 627 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 FO393422.1-201ENST00000603908 708 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 PPATP2-201ENST00000605635 508 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 RNA5SP440-201ENST00000612665 119 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms