Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 HIVEP2-203ENST00000367604 10032 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 CYCSP10-201ENST00000417973 294 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC097523.2-201ENST00000435551 652 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AL137845.2-201ENST00000444292 988 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC3.12□□□□□ -1.91
HSPG2P98160 SNORA74D-201ENST00000516404 141 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC3.12□□□□□ -1.91
HSPG2P98160 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.12□□□□□ -1.91
HSPG2P98160 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC011477.5-201ENST00000586571 259 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC008739.3-201ENST00000603262 127 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AC005191.1-201ENST00000603950 358 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC004777.1-201ENST00000624317 287 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 HRNR-201ENST00000368801 9623 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC032011.1-201ENST00000611703 1549 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 TRANK1-201ENST00000429976 10481 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 AL627171.1-201ENST00000618845 1308 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 SNORA9-201ENST00000384215 133 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 GTF2IP5-201ENST00000414608 731 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AC093578.1-201ENST00000415219 368 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 TMBIM7P-201ENST00000418074 855 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 YME1L1P1-201ENST00000429435 297 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AC000111.2-201ENST00000448200 210 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC3.12□□□□□ -1.91
HSPG2P98160 RN7SL339P-201ENST00000580597 296 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 MIR3939-201ENST00000582614 106 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 EIF1P5-201ENST00000585002 234 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AC244107.2-201ENST00000611773 76 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 TNC-210ENST00000535648 7508 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 AC107068.1-201ENST00000563286 4218 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 RMST-209ENST00000639542 3269 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 AC017104.4-201ENST00000636283 1592 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HSPG2P98160 RNA5SP90-201ENST00000364801 99 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 GLUD1P3-202ENST00000508551 200 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AC012400.1-201ENST00000518452 381 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.12□□□□□ -1.91
HSPG2P98160 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 OR8R1P-201ENST00000543943 764 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC090948.2-201ENST00000607363 564 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HSPG2P98160 FZD10-AS1-201ENST00000505807 10193 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 OR56B2P-202ENST00000641377 2453 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC3.11□□□□□ -1.91
HSPG2P98160 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HSPG2P98160 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
HSPG2P98160 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC3.11□□□□□ -1.91
HSPG2P98160 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
HSPG2P98160 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
HSPG2P98160 FBXL20-201ENST00000264658 10388 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HSPG2P98160 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HSPG2P98160 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
HSPG2P98160 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC3.11□□□□□ -1.91
HSPG2P98160 OR51B3P-201ENST00000412287 913 ntBASIC3.11□□□□□ -1.91
HSPG2P98160 RNGTTP1-201ENST00000420965 728 ntBASIC3.11□□□□□ -1.91
HSPG2P98160 YWHAZP2-201ENST00000440317 728 ntBASIC3.11□□□□□ -1.91
HSPG2P98160 AC079922.1-201ENST00000443291 359 ntBASIC3.11□□□□□ -1.91
HSPG2P98160 AL445687.2-201ENST00000458156 728 ntBASIC3.11□□□□□ -1.91
HSPG2P98160 NPM1P6-201ENST00000521088 871 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms