Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
HOXA1P49639 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXA1P49639 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXA1P49639 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXA1P49639 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC4.84□□□□□ -1.63
HOXA1P49639 AC068620.3-201ENST00000602749 560 ntBASIC4.84□□□□□ -1.63
HOXA1P49639 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXA1P49639 MTCO3P22-201ENST00000603219 784 ntBASIC4.84□□□□□ -1.63
HOXA1P49639 AC026741.1-201ENST00000605892 482 ntBASIC4.84□□□□□ -1.63
HOXA1P49639 AC034236.3-201ENST00000605999 461 ntBASIC4.84□□□□□ -1.63
HOXA1P49639 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXA1P49639 AC004241.3-201ENST00000611728 517 ntBASIC4.84□□□□□ -1.63
HOXA1P49639 MIR6774-201ENST00000614651 70 ntBASIC4.84□□□□□ -1.63
HOXA1P49639 AC018926.1-201ENST00000616335 435 ntBASIC4.84□□□□□ -1.63
HOXA1P49639 AC019080.5-201ENST00000624891 757 ntBASIC4.84□□□□□ -1.63
HOXA1P49639 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXA1P49639 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXA1P49639 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXA1P49639 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXA1P49639 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXA1P49639 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
HOXA1P49639 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.84□□□□□ -1.64
HOXA1P49639 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC4.84□□□□□ -1.64
HOXA1P49639 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
HOXA1P49639 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXA1P49639 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HOXA1P49639 AL356317.1-201ENST00000396110 1436 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HOXA1P49639 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HOXA1P49639 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 AC087752.1-201ENST00000391360 558 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AC233289.1-201ENST00000403700 508 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 MYL6P5-201ENST00000412707 459 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 GAPDHP19-201ENST00000431768 1005 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AL606490.7-201ENST00000433136 191 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 MTCYBP21-201ENST00000443300 1113 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 OR2L9P-201ENST00000444456 913 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 AL645937.3-201ENST00000453647 936 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXA1P49639 NPM1P17-201ENST00000479221 602 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 PDCL3P4-201ENST00000489621 720 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AC015864.1-201ENST00000496512 544 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 GTF2IP9-201ENST00000502460 301 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 AC138409.2-202ENST00000507274 458 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AP003355.1-201ENST00000518956 587 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 AP001372.4-201ENST00000524889 472 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC4.83□□□□□ -1.64
HOXA1P49639 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXA1P49639 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 AC007346.2-201ENST00000564816 892 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 AC027796.1-201ENST00000575593 512 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 AC005224.3-201ENST00000584683 2140 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXA1P49639 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 AL008729.2-201ENST00000606393 473 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AC018754.1-201ENST00000607486 925 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AL121652.1-201ENST00000608851 448 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AL592494.3-201ENST00000609485 464 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 AC068880.4-201ENST00000623082 495 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 AC022400.9-201ENST00000623633 273 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 SNX18P12-201ENST00000624821 759 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 AL731532.2-201ENST00000623542 1953 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 ADAM5-202ENST00000399789 1942 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HOXA1P49639 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms