Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 RN7SL459P-201ENST00000481078 302 ntBASIC5.34□□□□□ -1.55
CXCL12P48061 RN7SL423P-201ENST00000486202 304 ntBASIC5.34□□□□□ -1.55
CXCL12P48061 PRELID3BP5-201ENST00000508612 460 ntBASIC5.34□□□□□ -1.55
CXCL12P48061 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.34□□□□□ -1.55
CXCL12P48061 AC012400.1-201ENST00000518452 381 ntBASIC5.34□□□□□ -1.55
CXCL12P48061 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.34□□□□□ -1.55
CXCL12P48061 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.34□□□□□ -1.55
CXCL12P48061 AC093524.1-201ENST00000564266 1094 ntBASIC5.34□□□□□ -1.55
CXCL12P48061 MIR4270-201ENST00000581799 70 ntBASIC5.34□□□□□ -1.55
CXCL12P48061 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.34□□□□□ -1.55
CXCL12P48061 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC5.34□□□□□ -1.55
CXCL12P48061 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.34□□□□□ -1.55
CXCL12P48061 AL133406.3-201ENST00000606817 541 ntBASIC5.34□□□□□ -1.55
CXCL12P48061 AL356752.1-201ENST00000615844 593 ntBASIC5.34□□□□□ -1.55
CXCL12P48061 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.34□□□□□ -1.55
CXCL12P48061 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.34□□□□□ -1.55
CXCL12P48061 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CXCL12P48061 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CXCL12P48061 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CXCL12P48061 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
CXCL12P48061 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CXCL12P48061 AL353796.1-201ENST00000561542 3241 ntBASIC5.34□□□□□ -1.56
CXCL12P48061 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
CXCL12P48061 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.56
CXCL12P48061 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CXCL12P48061 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC5.33□□□□□ -1.56
CXCL12P48061 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CXCL12P48061 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 BCORP1-203ENST00000513194 5093 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CXCL12P48061 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.33□□□□□ -1.56
CXCL12P48061 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.33□□□□□ -1.56
CXCL12P48061 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 RNU1-32P-201ENST00000363937 159 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 NUDT19P3-201ENST00000404698 555 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 AL133482.1-201ENST00000415988 498 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC5.33□□□□□ -1.56
CXCL12P48061 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CXCL12P48061 DDX39BP1-205ENST00000422507 192 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 HSPD1P12-201ENST00000429127 1069 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 KATNBL1P2-201ENST00000433311 835 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.33□□□□□ -1.56
CXCL12P48061 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.33□□□□□ -1.56
CXCL12P48061 HMGN2P25-201ENST00000486956 268 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 AC023818.1-201ENST00000498379 384 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.33□□□□□ -1.56
CXCL12P48061 AL512310.9-201ENST00000553311 948 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.33□□□□□ -1.56
CXCL12P48061 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 AC008745.1-201ENST00000604064 271 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 AL031320.1-201ENST00000604177 357 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 AC012414.7-202ENST00000622705 1090 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 AC073869.10-201ENST00000642016 354 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
CXCL12P48061 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CXCL12P48061 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 AC005725.1-201ENST00000577346 2607 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.33□□□□□ -1.56
CXCL12P48061 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.33□□□□□ -1.56
CXCL12P48061 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CXCL12P48061 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.33□□□□□ -1.56
CXCL12P48061 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
CXCL12P48061 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
CXCL12P48061 NXF4-202ENST00000416098 1465 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 AC092747.4-201ENST00000620519 1861 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.32□□□□□ -1.56
CXCL12P48061 SCARNA15-201ENST00000607520 4325 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 AL356317.1-201ENST00000396110 1436 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CXCL12P48061 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CXCL12P48061 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.32□□□□□ -1.56
CXCL12P48061 IRF5P1-201ENST00000504852 2164 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CXCL12P48061 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.32□□□□□ -1.56
CXCL12P48061 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.32□□□□□ -1.56
CXCL12P48061 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CXCL12P48061 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CXCL12P48061 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CXCL12P48061 SNORA62-201ENST00000365493 153 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 RPL7P58-201ENST00000402913 758 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 NPM1P40-201ENST00000412758 733 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 CHEK2P3-201ENST00000416118 248 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.32□□□□□ -1.56
CXCL12P48061 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.32□□□□□ -1.56
CXCL12P48061 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.32□□□□□ -1.56
CXCL12P48061 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.32□□□□□ -1.56
CXCL12P48061 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.32□□□□□ -1.56
CXCL12P48061 TPT1P12-201ENST00000448968 492 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 NDUFA5P8-201ENST00000449019 346 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 NDUFA12P1-201ENST00000455914 406 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.32□□□□□ -1.56
CXCL12P48061 RN7SL385P-201ENST00000468873 276 ntBASIC5.32□□□□□ -1.56
CXCL12P48061 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms