Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.96□□□□□ -1.3
HOXC9P31274 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HOXC9P31274 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HOXC9P31274 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
HOXC9P31274 RN7SKP149-201ENST00000363008 344 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
HOXC9P31274 CHEK2P3-201ENST00000416118 248 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HOXC9P31274 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.95□□□□□ -1.3
HOXC9P31274 USP9YP9-201ENST00000429406 715 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.95□□□□□ -1.3
HOXC9P31274 AL590399.4-201ENST00000436561 601 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.95□□□□□ -1.3
HOXC9P31274 AC073072.2-201ENST00000447425 348 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
HOXC9P31274 PSAT1P4-201ENST00000466500 526 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 AC105420.1-201ENST00000504389 582 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.95□□□□□ -1.3
HOXC9P31274 BTF3P13-201ENST00000513224 490 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.95□□□□□ -1.3
HOXC9P31274 AC006427.1-201ENST00000514359 712 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC6.95□□□□□ -1.3
HOXC9P31274 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.95□□□□□ -1.3
HOXC9P31274 AC021006.3-201ENST00000530771 192 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.95□□□□□ -1.3
HOXC9P31274 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6.95□□□□□ -1.3
HOXC9P31274 AC009117.1-201ENST00000563948 554 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.95□□□□□ -1.3
HOXC9P31274 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC6.95□□□□□ -1.3
HOXC9P31274 MIR4330-201ENST00000579077 105 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 AC108738.1-201ENST00000603703 237 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 MEMO1P5-201ENST00000604810 406 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 AP005432.2-201ENST00000608162 586 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HOXC9P31274 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
HOXC9P31274 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HOXC9P31274 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HOXC9P31274 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
HOXC9P31274 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HOXC9P31274 MFSD4BP1-201ENST00000513330 1552 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.95□□□□□ -1.3
HOXC9P31274 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HOXC9P31274 NR1H5P-201ENST00000452683 1377 ntBASIC6.95□□□□□ -1.3
HOXC9P31274 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HOXC9P31274 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.94□□□□□ -1.3
HOXC9P31274 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HOXC9P31274 RNA5SP428-201ENST00000365129 132 ntBASIC6.94□□□□□ -1.3
HOXC9P31274 AC136624.1-201ENST00000400791 413 ntBASIC6.94□□□□□ -1.3
HOXC9P31274 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HOXC9P31274 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.94□□□□□ -1.3
HOXC9P31274 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.94□□□□□ -1.3
HOXC9P31274 AC008072.1-201ENST00000434254 824 ntBASIC6.94□□□□□ -1.3
HOXC9P31274 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.94□□□□□ -1.3
HOXC9P31274 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.94□□□□□ -1.3
HOXC9P31274 NOP56P2-201ENST00000447491 769 ntBASIC6.94□□□□□ -1.3
HOXC9P31274 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.94□□□□□ -1.3
HOXC9P31274 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.94□□□□□ -1.3
HOXC9P31274 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.94□□□□□ -1.3
HOXC9P31274 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.94□□□□□ -1.3
HOXC9P31274 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.94□□□□□ -1.3
HOXC9P31274 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.94□□□□□ -1.3
HOXC9P31274 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.94□□□□□ -1.3
HOXC9P31274 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HOXC9P31274 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
HOXC9P31274 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.94□□□□□ -1.3
HOXC9P31274 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
HOXC9P31274 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
HOXC9P31274 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
HOXC9P31274 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 AC132825.1-201ENST00000463573 2247 ntBASIC6.93□□□□□ -1.3
HOXC9P31274 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
HOXC9P31274 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HOXC9P31274 OR8V1P-201ENST00000395193 873 ntBASIC6.93□□□□□ -1.3
HOXC9P31274 AC124944.2-201ENST00000429866 1242 ntBASIC6.93□□□□□ -1.3
HOXC9P31274 CEACAMP9-201ENST00000442990 513 ntBASIC6.93□□□□□ -1.3
HOXC9P31274 SEPT14P1-201ENST00000458703 648 ntBASIC6.93□□□□□ -1.3
HOXC9P31274 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 RN7SKP260-201ENST00000516907 149 ntBASIC6.93□□□□□ -1.3
HOXC9P31274 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC6.93□□□□□ -1.3
HOXC9P31274 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.93□□□□□ -1.3
HOXC9P31274 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HOXC9P31274 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.93□□□□□ -1.3
HOXC9P31274 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 AL356752.1-201ENST00000615844 593 ntBASIC6.93□□□□□ -1.3
HOXC9P31274 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HOXC9P31274 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.93□□□□□ -1.3
HOXC9P31274 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.93□□□□□ -1.3
HOXC9P31274 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.92□□□□□ -1.3
HOXC9P31274 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
HOXC9P31274 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.92□□□□□ -1.3
HOXC9P31274 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
HOXC9P31274 HSPA8P14-201ENST00000552265 1805 ntBASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms