Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL139124.1-201ENST00000609123 421 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 AC019193.2-201ENST00000610012 634 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A3P25940 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A3P25940 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A3P25940 AC079298.1-201ENST00000625026 1619 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A3P25940 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A3P25940 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A3P25940 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 CHIAP3-201ENST00000423668 1133 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 RPS29P9-201ENST00000440360 171 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.45□□□□□ -1.38
COL5A3P25940 SLC25A18P1-201ENST00000449385 454 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 RPS17P2-201ENST00000461663 408 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 RPL12P20-201ENST00000475538 479 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 AC025674.1-201ENST00000507074 324 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.45□□□□□ -1.38
COL5A3P25940 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.45□□□□□ -1.38
COL5A3P25940 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.44□□□□□ -1.38
COL5A3P25940 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 NBPF8-201ENST00000583271 5330 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.44□□□□□ -1.38
COL5A3P25940 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.44□□□□□ -1.38
COL5A3P25940 AC123769.2-201ENST00000624332 5984 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 AL451142.1-201ENST00000375867 775 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 SNORA2.3-201ENST00000383920 135 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL5A3P25940 CYCSP11-201ENST00000436426 315 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 BX679664.2-201ENST00000439282 283 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 AC011005.3-201ENST00000491624 395 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 HPRT1P1-201ENST00000509498 657 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC6.44□□□□□ -1.38
COL5A3P25940 OR5M2P-201ENST00000529003 936 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.44□□□□□ -1.38
COL5A3P25940 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.44□□□□□ -1.38
COL5A3P25940 AC104964.3-201ENST00000606115 2860 ntBASIC6.44□□□□□ -1.38
COL5A3P25940 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
COL5A3P25940 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.43□□□□□ -1.38
COL5A3P25940 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A3P25940 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A3P25940 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A3P25940 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.43□□□□□ -1.38
COL5A3P25940 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL5A3P25940 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL5A3P25940 AL049697.2-201ENST00000403708 294 ntBASIC6.43□□□□□ -1.38
COL5A3P25940 BX510359.2-201ENST00000417920 305 ntBASIC6.43□□□□□ -1.38
COL5A3P25940 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A3P25940 AL590399.2-201ENST00000427536 309 ntBASIC6.43□□□□□ -1.38
COL5A3P25940 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A3P25940 RPL7AP61-201ENST00000443410 636 ntBASIC6.43□□□□□ -1.38
COL5A3P25940 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A3P25940 AC098976.1-201ENST00000513014 541 ntBASIC6.43□□□□□ -1.38
COL5A3P25940 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC6.43□□□□□ -1.38
COL5A3P25940 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
COL5A3P25940 AL110118.1-201ENST00000553543 400 ntBASIC6.43□□□□□ -1.38
COL5A3P25940 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.43□□□□□ -1.38
COL5A3P25940 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL5A3P25940 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
COL5A3P25940 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 AC004158.1-201ENST00000564508 4319 ntBASIC6.43□□□□□ -1.38
COL5A3P25940 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL5A3P25940 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.43□□□□□ -1.38
COL5A3P25940 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 SNORA70.9-201ENST00000384370 135 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.42□□□□□ -1.38
COL5A3P25940 AL161722.1-201ENST00000446972 1032 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL5A3P25940 AL356981.1-201ENST00000454879 684 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 RPL23AP56-201ENST00000460778 453 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 OR52A4P-201ENST00000472867 958 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 AC020779.1-201ENST00000478757 796 ntBASIC6.42□□□□□ -1.38
COL5A3P25940 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms