Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC016027.4-201ENST00000450866 277 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 OR52A4P-201ENST00000472867 958 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC7.17□□□□□ -1.26
HMGB1P09429 AC044810.1-201ENST00000480271 711 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 RPL7P40-201ENST00000481703 745 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC7.17□□□□□ -1.26
HMGB1P09429 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC7.17□□□□□ -1.26
HMGB1P09429 AC027338.1-201ENST00000514840 825 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC7.17□□□□□ -1.26
HMGB1P09429 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC7.17□□□□□ -1.26
HMGB1P09429 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC7.17□□□□□ -1.26
HMGB1P09429 AC002519.2-203ENST00000567043 837 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 MIR4716-201ENST00000579628 84 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC7.17□□□□□ -1.26
HMGB1P09429 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC7.17□□□□□ -1.26
HMGB1P09429 PCNAP1-202ENST00000595299 752 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 uc_338.31-201ENST00000615595 186 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC7.17□□□□□ -1.26
HMGB1P09429 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC7.17□□□□□ -1.26
HMGB1P09429 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 AC027575.3-201ENST00000583058 2747 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 THAP12P9-201ENST00000503971 2360 ntBASIC7.17□□□□□ -1.26
HMGB1P09429 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.17□□□□□ -1.26
HMGB1P09429 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HMGB1P09429 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC7.17□□□□□ -1.26
HMGB1P09429 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
HMGB1P09429 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
HMGB1P09429 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC7.16□□□□□ -1.26
HMGB1P09429 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 AL118496.1-201ENST00000440201 1812 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 GNG5P2-201ENST00000372054 207 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
HMGB1P09429 AL358176.3-201ENST00000420757 454 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 RPSAP65-201ENST00000429660 595 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 AL357520.1-201ENST00000441557 453 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 CUBNP2-201ENST00000443534 1139 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 AC010683.1-201ENST00000473673 378 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 TRBV8-2-201ENST00000475637 270 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC7.16□□□□□ -1.26
HMGB1P09429 AC083795.1-201ENST00000491760 320 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 EEF1A1P25-201ENST00000495704 1267 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 MAST4-IT1-201ENST00000514241 658 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 RNA5SP441-201ENST00000516809 88 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 OR8A2P-201ENST00000528631 952 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC7.16□□□□□ -1.26
HMGB1P09429 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 AL136520.1-202ENST00000555494 763 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 AC106785.3-201ENST00000564064 847 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 STARD6-202ENST00000577499 696 ntTSL 2 BASIC7.16□□□□□ -1.26
HMGB1P09429 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 AC012254.4-201ENST00000588843 273 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 AC097460.3-201ENST00000623099 442 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC7.16□□□□□ -1.26
HMGB1P09429 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HMGB1P09429 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC7.16□□□□□ -1.26
HMGB1P09429 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 OR9K1P-202ENST00000641111 3217 ntBASIC7.16□□□□□ -1.26
HMGB1P09429 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
HMGB1P09429 USP9YP4-201ENST00000424401 1745 ntBASIC7.15□□□□□ -1.26
HMGB1P09429 AL031119.1-201ENST00000404707 1879 ntBASIC7.15□□□□□ -1.26
HMGB1P09429 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
HMGB1P09429 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
HMGB1P09429 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC7.15□□□□□ -1.26
HMGB1P09429 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
HMGB1P09429 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC7.15□□□□□ -1.26
HMGB1P09429 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
HMGB1P09429 RN7SKP86-201ENST00000410454 332 ntBASIC7.15□□□□□ -1.26
HMGB1P09429 RNU4-27P-201ENST00000410889 139 ntBASIC7.15□□□□□ -1.26
HMGB1P09429 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC7.15□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms