Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC009879.1-201ENST00000520029 839 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 AGGF1P9-201ENST00000561884 913 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 MT1CP-201ENST00000567054 174 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 AC011626.1-201ENST00000604710 562 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 uc_338.29-201ENST00000615099 168 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 AL122125.1-201ENST00000616999 600 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 FAM27E2-201ENST00000619668 403 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 AC241377.1-201ENST00000619797 406 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 AL357140.4-201ENST00000636827 412 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHOX2O60902 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHOX2O60902 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHOX2O60902 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHOX2O60902 DDX18P4-201ENST00000511690 1966 ntBASIC5.35□□□□□ -1.55
SHOX2O60902 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHOX2O60902 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 AL360270.2-201ENST00000562952 5985 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
SHOX2O60902 AC012078.1-201ENST00000405035 1646 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SHOX2O60902 SOCS5P3-201ENST00000425115 1576 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SHOX2O60902 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC5.34□□□□□ -1.55
SHOX2O60902 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 AC005294.1-201ENST00000355509 281 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 RNA5SP443-201ENST00000363083 132 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 MIR589-201ENST00000385238 99 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 GCNT1P4-201ENST00000404096 329 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 CYCSP10-201ENST00000417973 294 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.34□□□□□ -1.55
SHOX2O60902 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 AC108751.2-201ENST00000469993 231 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 RPS17P15-201ENST00000475609 349 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.34□□□□□ -1.55
SHOX2O60902 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 Vault.2-201ENST00000516519 98 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 RN7SKP35-201ENST00000517210 151 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 RN7SL356P-201ENST00000582228 248 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 NPM1P45-201ENST00000583151 559 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 MIR6809-201ENST00000612189 116 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 AC004801.6-201ENST00000616571 978 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 AL136228.1-201ENST00000622221 319 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.34□□□□□ -1.55
SHOX2O60902 MIR4302-201ENST00000638058 60 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHOX2O60902 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
SHOX2O60902 Z95327.2-201ENST00000414579 1873 ntBASIC5.34□□□□□ -1.55
SHOX2O60902 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.34□□□□□ -1.56
SHOX2O60902 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SHOX2O60902 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
SHOX2O60902 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHOX2O60902 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHOX2O60902 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHOX2O60902 MIR130B-202ENST00000385018 82 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 AL139158.1-201ENST00000424719 340 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 AC099782.1-201ENST00000425889 474 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SHOX2O60902 AC006335.2-201ENST00000437993 330 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 AC068491.1-201ENST00000449539 1241 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 OR11I1P-201ENST00000486033 954 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHOX2O60902 AC109464.1-201ENST00000511091 819 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 ENPP7P9-201ENST00000514456 627 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 RN7SKP238-201ENST00000516483 249 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.33□□□□□ -1.56
SHOX2O60902 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.33□□□□□ -1.56
SHOX2O60902 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.33□□□□□ -1.56
SHOX2O60902 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHOX2O60902 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.33□□□□□ -1.56
SHOX2O60902 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.33□□□□□ -1.56
SHOX2O60902 AC063977.5-201ENST00000601044 974 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 AC008536.1-201ENST00000602872 669 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 AC087283.1-201ENST00000604029 1074 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 IMMP1LP1-201ENST00000605170 488 ntBASIC5.33□□□□□ -1.56
SHOX2O60902 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms