Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AC100757.1-201ENST00000616872 1835 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 OR52B3P-201ENST00000314715 928 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 MIR375-201ENST00000362103 64 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 HMGB1P20-201ENST00000402555 677 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 LYPLA1P3-201ENST00000402650 695 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 FGF12-202ENST00000430714 603 ntTSL 2 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AL591363.1-201ENST00000450091 483 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AC087672.1-201ENST00000479876 766 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 RPS3AP15-201ENST00000483874 781 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 RNA5SP230-201ENST00000517039 122 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 MRPS16P1-201ENST00000523462 412 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 TRIM51DP-201ENST00000529746 596 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 GNG2-208ENST00000554875 430 ntTSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 MIR4660-201ENST00000583549 74 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AP005431.1-201ENST00000618479 319 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AL390318.1-201ENST00000624564 687 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 RFC1-217ENST00000639695 867 ntTSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AC003985.2-201ENST00000562268 1669 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 AC005332.5-201ENST00000591222 2919 ntBASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
RHBDD3Q9Y3P4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 RNA5SP394-201ENST00000364216 119 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AL009179.1-201ENST00000406085 265 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 RPS3AP2-201ENST00000407190 754 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 RIMKLBP2-201ENST00000424737 654 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 MTCO1P51-201ENST00000427672 1060 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AC006335.2-201ENST00000437993 330 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 HMGN1P2-201ENST00000445197 310 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 PFN1P8-201ENST00000497012 543 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 NPM1P52-201ENST00000518264 846 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AC018442.3-201ENST00000523025 183 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 OR5AM1P-201ENST00000532136 1032 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 NANOGNBP2-201ENST00000544753 553 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AC124856.1-201ENST00000600819 896 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 AL096712.1-201ENST00000614561 159 ntBASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RHBDD3Q9Y3P4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms