Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 MUC2-202ENST00000613187 4845 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC092376.2-201ENST00000622621 4116 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 CASC19-248ENST00000641674 1356 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 MIR133B-201ENST00000362210 119 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 RNA5SP234-201ENST00000363916 119 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AL031985.1-201ENST00000392713 418 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AL391422.1-201ENST00000402155 436 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 COX5BP7-201ENST00000414780 274 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 DSTNP5-201ENST00000427921 523 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC012075.1-201ENST00000436549 580 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AL138899.2-201ENST00000439139 499 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 RPS11P7-201ENST00000442125 465 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC100832.1-201ENST00000471945 383 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 RNA5SP230-201ENST00000517039 122 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 HMGB1P40-201ENST00000525121 540 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 PRPF19P1-201ENST00000584766 898 ntBASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS29Q9UBQ0 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 MAPK10-328ENST00000641553 4009 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC097063.1-201ENST00000426714 1797 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC007618.1-201ENST00000366455 732 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 OR4K12P-201ENST00000406538 961 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 MIR1282-201ENST00000408865 101 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 RPL12P9-201ENST00000412942 488 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 CDY17P-201ENST00000414121 1282 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 VN1R3-201ENST00000418822 919 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AP000281.1-201ENST00000444036 316 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 NOP56P2-201ENST00000447491 769 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 PRPF38AP1-201ENST00000451976 933 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 RPL35AP19-201ENST00000469425 329 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 PPIAP19-201ENST00000486414 492 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 RN7SL814P-201ENST00000487715 300 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 RN7SL447P-201ENST00000494711 245 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC027544.3-201ENST00000535082 757 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC040958.1-201ENST00000561102 201 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC011626.1-201ENST00000604710 562 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC104695.2-201ENST00000605056 775 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 WBP1LP8-201ENST00000617401 327 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 MIR8080-201ENST00000622224 89 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 AC074101.1-201ENST00000637861 241 ntBASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
VPS29Q9UBQ0 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms