Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.4□□□□□ -1.39
TRIM39Q9HCM9 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.39
TRIM39Q9HCM9 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.39
TRIM39Q9HCM9 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
TRIM39Q9HCM9 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
TRIM39Q9HCM9 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC009779.8-201ENST00000641684 4384 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC013488.1-201ENST00000526618 1838 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC005332.9-201ENST00000620266 2921 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 RNA5SP350-201ENST00000363298 111 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 SNORD113-6-201ENST00000363345 75 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 RNU6-83P-201ENST00000384568 112 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 PRELID1P1-201ENST00000403549 660 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 RN7SKP182-201ENST00000410772 298 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 RAP1BP1-201ENST00000412709 553 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 KCTD9P1-201ENST00000430462 1167 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 MTND4P32-201ENST00000437189 1237 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 CACYBPP1-201ENST00000438592 684 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 ARMC4P1-201ENST00000438905 707 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC007383.1-201ENST00000445875 636 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 RBMY2TP-201ENST00000451162 947 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC234781.3-201ENST00000452540 973 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 RN7SL39P-201ENST00000462264 297 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC005165.2-201ENST00000466070 380 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 FABP5P12-201ENST00000515543 389 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 SNORA74.1-201ENST00000516320 180 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC124293.1-201ENST00000530034 493 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC026898.1-201ENST00000586404 571 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC011500.1-201ENST00000601963 469 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 WBP1LP12-201ENST00000604449 331 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC097467.4-201ENST00000605504 141 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 AC099676.1-201ENST00000608886 657 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 VN1R7P-201ENST00000619242 903 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 MRPL57P1-201ENST00000621486 265 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 DDX18P5-201ENST00000534547 1306 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 SAGE3P-201ENST00000619800 1635 ntBASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
TRIM39Q9HCM9 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 SNORD35A-201ENST00000363389 86 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 RN7SKP250-201ENST00000363924 321 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AL050335.1-201ENST00000396909 869 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AL079342.2-201ENST00000403367 482 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 MIR1302-8-201ENST00000408342 128 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 THEM7P-201ENST00000419556 672 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 MTND4P20-201ENST00000424125 869 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 HSD52-202ENST00000436225 772 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 RPL7P29-201ENST00000437151 728 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC126121.1-201ENST00000482313 553 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 NDUFB4P12-201ENST00000513465 390 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms