Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NEK3-211ENST00000629912 141 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 CR1-204ENST00000367052 7469 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.52□□□□□ -1.36
CCDC88AQ3V6T2 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.52□□□□□ -1.36
CCDC88AQ3V6T2 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AL353625.1-202ENST00000366273 571 ntBASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 RNU6-398P-201ENST00000384143 109 ntBASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 RPS4XP9-201ENST00000405151 780 ntBASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AC093655.2-201ENST00000425735 631 ntBASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AC092754.1-201ENST00000472975 479 ntBASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 BX284613.1-201ENST00000452221 1641 ntBASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AL355834.1-201ENST00000556602 3965 ntBASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 KYNUP3-201ENST00000574386 1341 ntBASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC88AQ3V6T2 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC007064.3-201ENST00000422608 359 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 RBMY2TP-201ENST00000451162 947 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC009963.2-201ENST00000453431 138 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 RN7SL354P-201ENST00000469282 294 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC058823.1-201ENST00000485315 474 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC068790.7-201ENST00000602347 528 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AL352984.2-202ENST00000613699 155 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC079097.1-201ENST00000512187 1399 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC004690.1-201ENST00000418216 328 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC009480.2-201ENST00000422916 432 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AL590399.2-201ENST00000427536 309 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 Z92846.1-201ENST00000456203 268 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 GAPDHP56-201ENST00000506031 988 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 UBE2FP2-201ENST00000566646 462 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC005377.1-201ENST00000605126 456 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 AC099494.2-201ENST00000623371 978 ntBASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
CCDC88AQ3V6T2 MIPEPP2-201ENST00000422560 1819 ntBASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 LCOR-201ENST00000286067 4542 ntBASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 RNA5SP479-201ENST00000364858 117 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms