Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 MAPK10-349ENST00000641767 3661 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
FOXA3P55318 FTX-210ENST00000603037 8347 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
FOXA3P55318 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA3P55318 ANAPC1P1-201ENST00000426186 2145 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
FOXA3P55318 AC023421.1-201ENST00000590535 1785 ntBASIC3.97□□□□□ -1.77
FOXA3P55318 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
FOXA3P55318 AL672167.1-205ENST00000641112 3080 ntBASIC3.96□□□□□ -1.77
FOXA3P55318 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.77
FOXA3P55318 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC3.96□□□□□ -1.78
FOXA3P55318 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA3P55318 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 RNU1-65P-201ENST00000363919 148 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AC013442.1-201ENST00000397347 228 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC3.96□□□□□ -1.78
FOXA3P55318 MARK2P12-201ENST00000420129 585 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 BX284632.2-201ENST00000421091 399 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 RPL36AP10-201ENST00000421785 322 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA3P55318 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 HSPE1P27-201ENST00000430808 296 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA3P55318 AL512605.1-202ENST00000441919 381 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AL359955.2-201ENST00000445380 353 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AL035090.1-201ENST00000454835 332 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 RPL7AP10-201ENST00000481016 791 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 AC138517.1-201ENST00000515724 568 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 RNA5SP303-201ENST00000516192 130 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 RNU6-964P-201ENST00000516524 69 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA3P55318 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC3.96□□□□□ -1.78
FOXA3P55318 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXA3P55318 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA3P55318 RN7SL66P-201ENST00000582099 264 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXA3P55318 RNF138P2-201ENST00000603490 592 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXA3P55318 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA3P55318 AC108673.3-201ENST00000609183 335 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AC091059.2-201ENST00000623355 614 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA3P55318 5S_rRNA.29-201ENST00000641250 107 ntBASIC3.96□□□□□ -1.78
FOXA3P55318 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC3.96□□□□□ -1.78
FOXA3P55318 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXA3P55318 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXA3P55318 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA3P55318 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA3P55318 CASC19-221ENST00000641309 1382 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 OR7E25P-201ENST00000344844 931 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 SNORA64.1-201ENST00000362600 132 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA3P55318 BMS1P3-201ENST00000372011 932 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 SNORA51.9-201ENST00000384295 124 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 YWHAZP6-201ENST00000399764 738 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 AC009238.2-201ENST00000431026 355 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 GAPDHP59-201ENST00000435908 267 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA3P55318 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA3P55318 NOP56P2-201ENST00000447491 769 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 RN7SL254P-201ENST00000460609 284 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA3P55318 ALG13-211ENST00000473389 693 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 AC087672.1-201ENST00000479876 766 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 RPL7P41-201ENST00000485823 957 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms