Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 AC006427.1-201ENST00000514359 712 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 SNORA70.11-201ENST00000515987 138 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 SNORA70.13-201ENST00000516116 138 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.06□□□□□ -1.6
FOXA1P55317 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.06□□□□□ -1.6
FOXA1P55317 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
FOXA1P55317 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.06□□□□□ -1.6
FOXA1P55317 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC5.06□□□□□ -1.6
FOXA1P55317 RPL10P14-201ENST00000565265 298 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.06□□□□□ -1.6
FOXA1P55317 MIR4310-201ENST00000582950 57 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.06□□□□□ -1.6
FOXA1P55317 RN7SL787P-201ENST00000613000 284 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 AC108359.1-201ENST00000616451 1211 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.06□□□□□ -1.6
FOXA1P55317 MIR1910-201ENST00000636955 80 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.06□□□□□ -1.6
FOXA1P55317 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.06□□□□□ -1.6
FOXA1P55317 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 AC100778.3-201ENST00000580060 1750 ntBASIC5.06□□□□□ -1.6
FOXA1P55317 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.06□□□□□ -1.6
FOXA1P55317 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.06□□□□□ -1.6
FOXA1P55317 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
FOXA1P55317 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
FOXA1P55317 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
FOXA1P55317 AC063976.2-201ENST00000425667 3556 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
FOXA1P55317 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
FOXA1P55317 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
FOXA1P55317 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
FOXA1P55317 AP001284.1-201ENST00000528393 2118 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.05□□□□□ -1.6
FOXA1P55317 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.05□□□□□ -1.6
FOXA1P55317 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
FOXA1P55317 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.05□□□□□ -1.6
FOXA1P55317 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
FOXA1P55317 MIR105-1-201ENST00000385222 81 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 U3.32-201ENST00000408116 212 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 RN7SL273P-201ENST00000481561 299 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 RPEP1-201ENST00000504507 658 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC5.05□□□□□ -1.6
FOXA1P55317 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.05□□□□□ -1.6
FOXA1P55317 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.05□□□□□ -1.6
FOXA1P55317 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
FOXA1P55317 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.05□□□□□ -1.6
FOXA1P55317 LSM3P2-201ENST00000551246 273 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.05□□□□□ -1.6
FOXA1P55317 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.05□□□□□ -1.6
FOXA1P55317 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.05□□□□□ -1.6
FOXA1P55317 RNA5SP440-201ENST00000612665 119 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.05□□□□□ -1.6
FOXA1P55317 AC073869.10-201ENST00000642016 354 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 THAP12P5-201ENST00000405864 2275 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
FOXA1P55317 AC003985.2-201ENST00000562268 1669 ntBASIC5.05□□□□□ -1.6
FOXA1P55317 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.05□□□□□ -1.6
FOXA1P55317 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
FOXA1P55317 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.04□□□□□ -1.6
FOXA1P55317 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.04□□□□□ -1.6
FOXA1P55317 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
FOXA1P55317 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
FOXA1P55317 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
FOXA1P55317 AL731532.2-201ENST00000623542 1953 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
FOXA1P55317 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
FOXA1P55317 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.04□□□□□ -1.6
FOXA1P55317 RN7SKP124-201ENST00000364730 341 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 RNU1-74P-201ENST00000384108 171 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 RNU1-77P-201ENST00000390868 162 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.04□□□□□ -1.6
FOXA1P55317 PCNPP4-201ENST00000414817 517 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.04□□□□□ -1.6
FOXA1P55317 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.04□□□□□ -1.6
FOXA1P55317 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.04□□□□□ -1.6
FOXA1P55317 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.04□□□□□ -1.6
FOXA1P55317 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
FOXA1P55317 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.04□□□□□ -1.6
FOXA1P55317 YWHAEP1-201ENST00000453697 763 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.04□□□□□ -1.6
FOXA1P55317 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.04□□□□□ -1.6
FOXA1P55317 RNU6-941P-201ENST00000516346 108 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 HMGB1P40-201ENST00000525121 540 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.04□□□□□ -1.6
FOXA1P55317 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.04□□□□□ -1.6
FOXA1P55317 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.04□□□□□ -1.6
FOXA1P55317 AC118658.2-201ENST00000618697 459 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
FOXA1P55317 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms