Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.18□□□□□ -1.58
SOX3P41225 IGLV3-24-201ENST00000517477 197 ntBASIC5.18□□□□□ -1.58
SOX3P41225 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.18□□□□□ -1.58
SOX3P41225 MIR4311-201ENST00000580794 100 ntBASIC5.18□□□□□ -1.58
SOX3P41225 PPATP2-201ENST00000605635 508 ntBASIC5.18□□□□□ -1.58
SOX3P41225 NANOGP3-201ENST00000605855 286 ntBASIC5.18□□□□□ -1.58
SOX3P41225 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.18□□□□□ -1.58
SOX3P41225 AC109309.2-201ENST00000612597 332 ntBASIC5.18□□□□□ -1.58
SOX3P41225 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.18□□□□□ -1.58
SOX3P41225 AL354696.1-201ENST00000614652 497 ntBASIC5.18□□□□□ -1.58
SOX3P41225 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.18□□□□□ -1.58
SOX3P41225 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.18□□□□□ -1.58
SOX3P41225 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.18□□□□□ -1.58
SOX3P41225 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.18□□□□□ -1.58
SOX3P41225 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.18□□□□□ -1.58
SOX3P41225 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.18□□□□□ -1.58
SOX3P41225 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.18□□□□□ -1.58
SOX3P41225 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.17□□□□□ -1.58
SOX3P41225 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.17□□□□□ -1.58
SOX3P41225 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.17□□□□□ -1.58
SOX3P41225 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
SOX3P41225 AC006600.2-201ENST00000624834 2506 ntBASIC5.17□□□□□ -1.58
SOX3P41225 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.17□□□□□ -1.58
SOX3P41225 RNA5SP132-201ENST00000364725 118 ntBASIC5.17□□□□□ -1.58
SOX3P41225 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SOX3P41225 AL391422.1-201ENST00000402155 436 ntBASIC5.17□□□□□ -1.58
SOX3P41225 AL136116.2-201ENST00000404020 785 ntBASIC5.17□□□□□ -1.58
SOX3P41225 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.17□□□□□ -1.58
SOX3P41225 RNGTTP1-201ENST00000420965 728 ntBASIC5.17□□□□□ -1.58
SOX3P41225 OR10T1P-201ENST00000424327 947 ntBASIC5.17□□□□□ -1.58
SOX3P41225 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.17□□□□□ -1.58
SOX3P41225 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.17□□□□□ -1.58
SOX3P41225 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 NPM1P28-201ENST00000492269 840 ntBASIC5.17□□□□□ -1.58
SOX3P41225 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.17□□□□□ -1.58
SOX3P41225 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.17□□□□□ -1.58
SOX3P41225 SNORA70.11-201ENST00000515987 138 ntBASIC5.17□□□□□ -1.58
SOX3P41225 SNORA70.13-201ENST00000516116 138 ntBASIC5.17□□□□□ -1.58
SOX3P41225 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.17□□□□□ -1.58
SOX3P41225 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SOX3P41225 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.17□□□□□ -1.58
SOX3P41225 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.17□□□□□ -1.58
SOX3P41225 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.17□□□□□ -1.58
SOX3P41225 AC125494.2-201ENST00000602431 657 ntBASIC5.17□□□□□ -1.58
SOX3P41225 AP000894.4-201ENST00000610185 483 ntBASIC5.17□□□□□ -1.58
SOX3P41225 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.17□□□□□ -1.58
SOX3P41225 AC022467.1-201ENST00000614738 749 ntBASIC5.17□□□□□ -1.58
SOX3P41225 AL162574.1-201ENST00000615702 950 ntBASIC5.17□□□□□ -1.58
SOX3P41225 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SOX3P41225 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.17□□□□□ -1.58
SOX3P41225 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SOX3P41225 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SOX3P41225 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SOX3P41225 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SOX3P41225 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 AL513548.1-201ENST00000562904 1724 ntBASIC5.17□□□□□ -1.58
SOX3P41225 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SOX3P41225 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.16□□□□□ -1.58
SOX3P41225 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.16□□□□□ -1.58
SOX3P41225 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 GAPDHP24-201ENST00000328713 983 ntBASIC5.16□□□□□ -1.58
SOX3P41225 RN7SKP28-201ENST00000364770 305 ntBASIC5.16□□□□□ -1.58
SOX3P41225 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 AL589994.1-201ENST00000404962 340 ntBASIC5.16□□□□□ -1.58
SOX3P41225 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.16□□□□□ -1.58
SOX3P41225 TRIM60P13-201ENST00000432350 1283 ntBASIC5.16□□□□□ -1.58
SOX3P41225 Z85994.2-201ENST00000434327 452 ntBASIC5.16□□□□□ -1.58
SOX3P41225 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX3P41225 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX3P41225 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.16□□□□□ -1.58
SOX3P41225 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX3P41225 EIF3LP3-201ENST00000495197 822 ntBASIC5.16□□□□□ -1.58
SOX3P41225 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX3P41225 ATP5LP3-201ENST00000514223 304 ntBASIC5.16□□□□□ -1.58
SOX3P41225 ACTR6P1-201ENST00000514311 1104 ntBASIC5.16□□□□□ -1.58
SOX3P41225 RNU6-1334P-201ENST00000516032 105 ntBASIC5.16□□□□□ -1.58
SOX3P41225 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.16□□□□□ -1.58
SOX3P41225 KCTD9P6-201ENST00000522306 950 ntBASIC5.16□□□□□ -1.58
SOX3P41225 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.16□□□□□ -1.58
SOX3P41225 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.16□□□□□ -1.58
SOX3P41225 AC009268.1-201ENST00000561352 1203 ntBASIC5.16□□□□□ -1.58
SOX3P41225 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.16□□□□□ -1.58
SOX3P41225 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms