Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX2P35548 MTND3P5-201ENST00000512798 333 ntBASIC5.95□□□□□ -1.46
MSX2P35548 MTND5P13-201ENST00000513046 1079 ntBASIC5.95□□□□□ -1.46
MSX2P35548 RNA5SP400-201ENST00000517155 111 ntBASIC5.95□□□□□ -1.46
MSX2P35548 COX6B1P4-201ENST00000519826 484 ntBASIC5.95□□□□□ -1.46
MSX2P35548 AC008429.4-201ENST00000521201 182 ntBASIC5.95□□□□□ -1.46
MSX2P35548 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 PDCL3P1-201ENST00000534575 734 ntBASIC5.95□□□□□ -1.46
MSX2P35548 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX2P35548 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.95□□□□□ -1.46
MSX2P35548 AC006518.2-201ENST00000542513 940 ntBASIC5.95□□□□□ -1.46
MSX2P35548 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX2P35548 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX2P35548 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX2P35548 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX2P35548 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX2P35548 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.95□□□□□ -1.46
MSX2P35548 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC5.95□□□□□ -1.46
MSX2P35548 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX2P35548 NPIPB1P-202ENST00000588786 828 ntBASIC5.95□□□□□ -1.46
MSX2P35548 AL589863.1-201ENST00000595383 631 ntBASIC5.95□□□□□ -1.46
MSX2P35548 RPS27AP19-201ENST00000597285 458 ntBASIC5.95□□□□□ -1.46
MSX2P35548 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX2P35548 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX2P35548 AL583832.1-201ENST00000603227 784 ntBASIC5.95□□□□□ -1.46
MSX2P35548 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX2P35548 AC092354.2-201ENST00000607786 514 ntBASIC5.95□□□□□ -1.46
MSX2P35548 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX2P35548 RMST_10.1-201ENST00000616309 154 ntBASIC5.95□□□□□ -1.46
MSX2P35548 AC103564.3-201ENST00000621194 220 ntBASIC5.95□□□□□ -1.46
MSX2P35548 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX2P35548 AL357140.4-201ENST00000636827 412 ntBASIC5.95□□□□□ -1.46
MSX2P35548 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
MSX2P35548 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
MSX2P35548 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX2P35548 AC140479.2-201ENST00000421567 3130 ntBASIC5.95□□□□□ -1.46
MSX2P35548 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX2P35548 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX2P35548 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX2P35548 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX2P35548 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
MSX2P35548 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
MSX2P35548 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 AL049737.1-201ENST00000413920 1403 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AL359715.4-201ENST00000606629 1436 ntBASIC5.94□□□□□ -1.46
MSX2P35548 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX2P35548 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
MSX2P35548 PPIAP24-201ENST00000328558 471 ntBASIC5.94□□□□□ -1.46
MSX2P35548 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
MSX2P35548 RNA5SP514-201ENST00000363717 111 ntBASIC5.94□□□□□ -1.46
MSX2P35548 RNU6-236P-201ENST00000363886 106 ntBASIC5.94□□□□□ -1.46
MSX2P35548 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 RPS3AP26-201ENST00000398259 784 ntBASIC5.94□□□□□ -1.46
MSX2P35548 RPL7P27-201ENST00000403775 720 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AL096800.1-201ENST00000405326 893 ntBASIC5.94□□□□□ -1.46
MSX2P35548 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AC000089.1-201ENST00000424559 801 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 PTGES3P1-201ENST00000439531 483 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AL627224.1-201ENST00000448334 444 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 GYG1P1-201ENST00000460864 698 ntBASIC5.94□□□□□ -1.46
MSX2P35548 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.94□□□□□ -1.46
MSX2P35548 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AC131392.1-201ENST00000506490 633 ntBASIC5.94□□□□□ -1.46
MSX2P35548 B3GNTL1P1-201ENST00000509174 289 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AC110775.1-201ENST00000513721 462 ntBASIC5.94□□□□□ -1.46
MSX2P35548 IGKV1D-32-201ENST00000517449 318 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX2P35548 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC5.94□□□□□ -1.46
MSX2P35548 OR5AM1P-201ENST00000532136 1032 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX2P35548 SETP1-201ENST00000556014 845 ntBASIC5.94□□□□□ -1.46
MSX2P35548 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms