Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.22□□□□□ -1.57
TNFP01375 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.22□□□□□ -1.57
TNFP01375 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.22□□□□□ -1.57
TNFP01375 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.22□□□□□ -1.57
TNFP01375 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.22□□□□□ -1.57
TNFP01375 EIF3KP3-201ENST00000514461 639 ntBASIC5.22□□□□□ -1.57
TNFP01375 AC111000.6-201ENST00000514471 709 ntBASIC5.22□□□□□ -1.57
TNFP01375 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.22□□□□□ -1.57
TNFP01375 OR4A17P-201ENST00000526032 904 ntBASIC5.22□□□□□ -1.57
TNFP01375 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.22□□□□□ -1.57
TNFP01375 OR11H3P-201ENST00000554547 982 ntBASIC5.22□□□□□ -1.57
TNFP01375 AC009962.1-201ENST00000567327 3813 ntBASIC5.22□□□□□ -1.57
TNFP01375 AL359715.3-201ENST00000569267 2123 ntBASIC5.22□□□□□ -1.57
TNFP01375 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.22□□□□□ -1.57
TNFP01375 RN7SL708P-201ENST00000580952 299 ntBASIC5.22□□□□□ -1.57
TNFP01375 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.22□□□□□ -1.57
TNFP01375 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.22□□□□□ -1.57
TNFP01375 AC090510.2-201ENST00000617465 629 ntBASIC5.22□□□□□ -1.57
TNFP01375 AF117829.2-201ENST00000619538 361 ntBASIC5.22□□□□□ -1.57
TNFP01375 AC009120.7-201ENST00000623452 780 ntBASIC5.22□□□□□ -1.57
TNFP01375 AP002799.1-201ENST00000623552 423 ntBASIC5.22□□□□□ -1.57
TNFP01375 AC135068.5-201ENST00000624197 983 ntBASIC5.22□□□□□ -1.57
TNFP01375 AC079776.5-201ENST00000641920 211 ntBASIC5.22□□□□□ -1.57
TNFP01375 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.22□□□□□ -1.57
TNFP01375 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
TNFP01375 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TNFP01375 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
TNFP01375 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TNFP01375 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.22□□□□□ -1.57
TNFP01375 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
TNFP01375 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
TNFP01375 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.57
TNFP01375 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
TNFP01375 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.57
TNFP01375 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.21□□□□□ -1.57
TNFP01375 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.21□□□□□ -1.57
TNFP01375 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.21□□□□□ -1.57
TNFP01375 AC232271.1-201ENST00000602455 2715 ntBASIC5.21□□□□□ -1.58
TNFP01375 SCARNA15-201ENST00000607520 4325 ntBASIC5.21□□□□□ -1.58
TNFP01375 AL031123.3-201ENST00000623345 1837 ntBASIC5.21□□□□□ -1.58
TNFP01375 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TNFP01375 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
TNFP01375 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TNFP01375 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
TNFP01375 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.21□□□□□ -1.58
TNFP01375 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.21□□□□□ -1.58
TNFP01375 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.21□□□□□ -1.58
TNFP01375 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.21□□□□□ -1.58
TNFP01375 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.21□□□□□ -1.58
TNFP01375 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.21□□□□□ -1.58
TNFP01375 RN7SL826P-201ENST00000479724 288 ntBASIC5.21□□□□□ -1.58
TNFP01375 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.21□□□□□ -1.58
TNFP01375 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.21□□□□□ -1.58
TNFP01375 AC012400.1-201ENST00000518452 381 ntBASIC5.21□□□□□ -1.58
TNFP01375 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.21□□□□□ -1.58
TNFP01375 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.58
TNFP01375 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.21□□□□□ -1.58
TNFP01375 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.21□□□□□ -1.58
TNFP01375 AC119501.1-201ENST00000603646 475 ntBASIC5.21□□□□□ -1.58
TNFP01375 AC009597.2-201ENST00000604659 592 ntBASIC5.21□□□□□ -1.58
TNFP01375 AP003400.3-201ENST00000624904 346 ntBASIC5.21□□□□□ -1.58
TNFP01375 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
TNFP01375 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.21□□□□□ -1.58
TNFP01375 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
TNFP01375 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
TNFP01375 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.21□□□□□ -1.58
TNFP01375 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.21□□□□□ -1.58
TNFP01375 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TNFP01375 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.21□□□□□ -1.58
TNFP01375 AC114774.1-201ENST00000507410 1770 ntBASIC5.21□□□□□ -1.58
TNFP01375 AC004076.2-201ENST00000620532 3323 ntBASIC5.21□□□□□ -1.58
TNFP01375 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TNFP01375 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.21□□□□□ -1.58
TNFP01375 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TNFP01375 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.2□□□□□ -1.58
TNFP01375 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
TNFP01375 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.2□□□□□ -1.58
TNFP01375 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
TNFP01375 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
TNFP01375 AC092747.4-201ENST00000620519 1861 ntBASIC5.2□□□□□ -1.58
TNFP01375 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TNFP01375 AP000432.2-201ENST00000624164 2048 ntBASIC5.2□□□□□ -1.58
TNFP01375 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
TNFP01375 RNU1-106P-201ENST00000384382 164 ntBASIC5.2□□□□□ -1.58
TNFP01375 AL589647.1-201ENST00000402485 466 ntBASIC5.2□□□□□ -1.58
TNFP01375 PPIAP9-201ENST00000403866 498 ntBASIC5.2□□□□□ -1.58
TNFP01375 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.2□□□□□ -1.58
TNFP01375 AL645937.3-201ENST00000453647 936 ntBASIC5.2□□□□□ -1.58
TNFP01375 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.2□□□□□ -1.58
TNFP01375 SCARNA20.4-201ENST00000516969 131 ntBASIC5.2□□□□□ -1.58
TNFP01375 AC079064.1-201ENST00000528365 362 ntBASIC5.2□□□□□ -1.58
TNFP01375 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.2□□□□□ -1.58
TNFP01375 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.2□□□□□ -1.58
TNFP01375 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
TNFP01375 AC009237.13-201ENST00000603193 276 ntBASIC5.2□□□□□ -1.58
TNFP01375 AC244107.2-201ENST00000611773 76 ntBASIC5.2□□□□□ -1.58
TNFP01375 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
TNFP01375 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TNFP01375 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TNFP01375 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms