Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL133217.1-201ENST00000450980 425 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC233982.1-201ENST00000451247 436 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC107015.1-201ENST00000466902 747 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC098818.1-201ENST00000478593 252 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC068522.1-201ENST00000482895 345 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC022206.1-201ENST00000495947 347 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC090819.1-201ENST00000523800 1111 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 KCTD9P4-201ENST00000526766 1166 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL133399.1-201ENST00000527476 298 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC135983.3-201ENST00000528049 1226 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 MT1CP-201ENST00000567054 174 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 MIR4301-201ENST00000577203 66 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC012368.3-201ENST00000604190 219 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC004890.3-201ENST00000605566 1095 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC024589.2-201ENST00000605642 1294 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC005261.4-201ENST00000600047 1385 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 AC005618.1-201ENST00000606901 3148 ntBASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.41□□□□□ -1.38
TRIM39Q9HCM9 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 LINC00328-2P-201ENST00000436585 219 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 HMGB1P48-201ENST00000446155 598 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AURKAPS1-201ENST00000451805 1212 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC091959.2-201ENST00000477363 321 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 RPF2P2-201ENST00000504693 896 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC091965.3-201ENST00000506236 208 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC118282.2-201ENST00000508739 374 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC083923.1-201ENST00000523708 376 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 MTCYBP33-201ENST00000575007 1130 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AL589765.6-201ENST00000601909 549 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC121247.2-201ENST00000604776 136 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC122108.2-201ENST00000611946 526 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AC145207.9-201ENST00000623802 325 ntBASIC6.4□□□□□ -1.38
TRIM39Q9HCM9 AL121936.2-201ENST00000641935 662 ntBASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms