Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AL451142.2-201ENST00000429076 2090 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 MIR143-201ENST00000385300 106 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 BX119321.1-201ENST00000428912 797 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 RPSAP37-201ENST00000470913 821 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AC021146.7-201ENST00000509604 775 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 SSX6-203ENST00000509958 336 ntTSL 3 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AC016550.3-201ENST00000515706 767 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 SCARNA6.1-201ENST00000516989 238 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AC021678.3-201ENST00000517893 476 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 RERGL-202ENST00000536890 367 ntTSL 3 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 DCN-210ENST00000547568 823 ntTSL 3 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AC090607.5-201ENST00000615692 224 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AC087565.3-203ENST00000641018 837 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 NLRP3P1-201ENST00000622303 1785 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 ZNF733P-202ENST00000444809 1573 ntBASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4AQ9BY43 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 RNA5SP46-201ENST00000362370 120 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC092642.1-201ENST00000392417 425 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 RNA5SP498-201ENST00000411342 120 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 RPL26P37-201ENST00000411983 438 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 ZNF92P1Y-201ENST00000415010 1191 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AL590806.1-201ENST00000415818 853 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 NDUFA5P1-201ENST00000433858 341 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AL161636.2-201ENST00000445179 927 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 HMGN1P36-201ENST00000446623 298 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AL627224.1-201ENST00000448334 444 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 FRG2FP-204ENST00000453982 852 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 TAAR4P-201ENST00000454843 1039 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 RN7SL273P-201ENST00000481561 299 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 RPS3AP15-201ENST00000483874 781 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 OR7E157P-201ENST00000494376 911 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 MGST2-204ENST00000506797 634 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC090424.1-201ENST00000535243 736 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC125612.1-201ENST00000547580 377 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 C1GALT1P1-201ENST00000548895 1089 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC010547.6-201ENST00000571789 193 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC005224.3-201ENST00000584683 2140 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC006272.2-201ENST00000594725 163 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AC007683.2-201ENST00000624681 714 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 MIR4302-201ENST00000638058 60 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 AL450326.2-201ENST00000421913 1962 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 BTBD10P1-201ENST00000549824 1352 ntBASIC7.44□□□□□ -1.22
CHMP4AQ9BY43 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms