Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
SMC1BQ8NDV3 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMC1BQ8NDV3 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.11□□□□□ -1.27
SMC1BQ8NDV3 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SMC1BQ8NDV3 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SMC1BQ8NDV3 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMC1BQ8NDV3 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMC1BQ8NDV3 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SMC1BQ8NDV3 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 ZNF101P1-201ENST00000435701 1720 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 Z86062.1-201ENST00000406773 777 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AL023284.3-201ENST00000407767 334 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AL133325.1-201ENST00000421090 382 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 ARL2BPP3-201ENST00000421226 480 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 RPL32P14-201ENST00000463196 378 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 HMGB1P3-201ENST00000502802 616 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AC112518.2-201ENST00000508565 425 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 RNU5A-7P-201ENST00000515979 116 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 QTRT1P1-201ENST00000604344 1078 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AC012213.4-201ENST00000606457 354 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AC012653.2-201ENST00000621880 420 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AL109659.3-201ENST00000624985 950 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 SAMMSON-209ENST00000641222 1100 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AC114786.1-201ENST00000512892 1415 ntBASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC7.1□□□□□ -1.27
SMC1BQ8NDV3 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC112243.1-201ENST00000623949 3851 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AL645568.2-201ENST00000432815 1337 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 RAD1P1-201ENST00000231383 813 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 MIR16-2-201ENST00000362117 81 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 RNU105B-201ENST00000364478 208 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 RPS15AP30-201ENST00000420976 390 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC245028.1-201ENST00000423259 256 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AL049745.1-201ENST00000433953 286 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 PA2G4P6-201ENST00000438325 1197 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC004854.1-201ENST00000440356 349 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC245047.2-201ENST00000441060 530 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AL356981.1-201ENST00000454879 684 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 DUXAP8-207ENST00000456786 622 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 RN7SL205P-201ENST00000490174 284 ntBASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC7.09□□□□□ -1.27
SMC1BQ8NDV3 AL049838.1-201ENST00000563647 981 ntBASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms