Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL035661.1-201ENST00000620459 1144 ntBASIC5.2□□□□□ -1.58
SOX3P41225 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 PWAR1-201ENST00000624188 2414 ntBASIC5.2□□□□□ -1.58
SOX3P41225 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 UGT2B24P-201ENST00000514441 1597 ntBASIC5.2□□□□□ -1.58
SOX3P41225 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 AC005005.4-201ENST00000623789 16698 ntBASIC5.2□□□□□ -1.58
SOX3P41225 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.19□□□□□ -1.58
SOX3P41225 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX3P41225 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.19□□□□□ -1.58
SOX3P41225 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.19□□□□□ -1.58
SOX3P41225 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.19□□□□□ -1.58
SOX3P41225 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX3P41225 Y_RNA.62-201ENST00000362840 99 ntBASIC5.19□□□□□ -1.58
SOX3P41225 RN7SKP124-201ENST00000364730 341 ntBASIC5.19□□□□□ -1.58
SOX3P41225 RNU1-136P-201ENST00000384181 164 ntBASIC5.19□□□□□ -1.58
SOX3P41225 MIR143-201ENST00000385300 106 ntBASIC5.19□□□□□ -1.58
SOX3P41225 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 RN7SKP229-201ENST00000410465 302 ntBASIC5.19□□□□□ -1.58
SOX3P41225 GPS2P1-201ENST00000411761 986 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AL133482.1-201ENST00000415988 498 ntBASIC5.19□□□□□ -1.58
SOX3P41225 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AC009784.1-201ENST00000426484 460 ntBASIC5.19□□□□□ -1.58
SOX3P41225 RSL24D1P8-201ENST00000434442 492 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AL390119.1-201ENST00000440329 312 ntBASIC5.19□□□□□ -1.58
SOX3P41225 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX3P41225 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SOX3P41225 LDHBP2-201ENST00000456969 1005 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX3P41225 RPS7P6-201ENST00000485777 579 ntBASIC5.19□□□□□ -1.58
SOX3P41225 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.19□□□□□ -1.58
SOX3P41225 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.19□□□□□ -1.58
SOX3P41225 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.19□□□□□ -1.58
SOX3P41225 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.19□□□□□ -1.58
SOX3P41225 NRBF2P4-201ENST00000520874 850 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AC087272.1-201ENST00000523624 533 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AC139697.1-201ENST00000548429 745 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX3P41225 AC023389.2-201ENST00000580031 955 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.19□□□□□ -1.58
SOX3P41225 AC010503.3-201ENST00000594355 540 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AC002069.2-201ENST00000603580 883 ntBASIC5.19□□□□□ -1.58
SOX3P41225 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.19□□□□□ -1.58
SOX3P41225 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC5.19□□□□□ -1.58
SOX3P41225 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SOX3P41225 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SOX3P41225 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.19□□□□□ -1.58
SOX3P41225 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX3P41225 AC002525.1-201ENST00000624392 1622 ntBASIC5.19□□□□□ -1.58
SOX3P41225 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 GVINP1-202ENST00000531871 7271 ntBASIC5.19□□□□□ -1.58
SOX3P41225 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SOX3P41225 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX3P41225 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 AC018809.2-201ENST00000602436 3823 ntBASIC5.18□□□□□ -1.58
SOX3P41225 OR9K1P-202ENST00000641111 3217 ntBASIC5.18□□□□□ -1.58
SOX3P41225 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.18□□□□□ -1.58
SOX3P41225 GAPDHP42-201ENST00000406848 981 ntBASIC5.18□□□□□ -1.58
SOX3P41225 OR3A2-201ENST00000408891 1076 ntBASIC5.18□□□□□ -1.58
SOX3P41225 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.18□□□□□ -1.58
SOX3P41225 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.18□□□□□ -1.58
SOX3P41225 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.18□□□□□ -1.58
SOX3P41225 AC012075.1-201ENST00000436549 580 ntBASIC5.18□□□□□ -1.58
SOX3P41225 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.18□□□□□ -1.58
SOX3P41225 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 AL359265.1-201ENST00000440296 795 ntBASIC5.18□□□□□ -1.58
SOX3P41225 CYCSP51-201ENST00000443545 318 ntBASIC5.18□□□□□ -1.58
SOX3P41225 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.18□□□□□ -1.58
SOX3P41225 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.18□□□□□ -1.58
SOX3P41225 AL450023.1-201ENST00000450868 751 ntBASIC5.18□□□□□ -1.58
SOX3P41225 MTND2P3-201ENST00000452458 470 ntBASIC5.18□□□□□ -1.58
SOX3P41225 VDAC2P4-201ENST00000452925 711 ntBASIC5.18□□□□□ -1.58
SOX3P41225 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.18□□□□□ -1.58
SOX3P41225 HESX1-202ENST00000473921 757 ntTSL 5 BASIC5.18□□□□□ -1.58
SOX3P41225 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.18□□□□□ -1.58
SOX3P41225 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.18□□□□□ -1.58
SOX3P41225 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX3P41225 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms