Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC068870.1-201ENST00000563737 2455 ntBASIC5.34□□□□□ -1.56
SHMT2P34897 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SHMT2P34897 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
SHMT2P34897 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SHMT2P34897 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SHMT2P34897 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SHMT2P34897 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.33□□□□□ -1.56
SHMT2P34897 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.33□□□□□ -1.56
SHMT2P34897 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 AC092681.1-201ENST00000297369 291 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.33□□□□□ -1.56
SHMT2P34897 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.33□□□□□ -1.56
SHMT2P34897 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.33□□□□□ -1.56
SHMT2P34897 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.33□□□□□ -1.56
SHMT2P34897 SIAH1P1-201ENST00000479411 923 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 RN7SL184P-201ENST00000488308 297 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 RN7SL547P-201ENST00000490793 290 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.33□□□□□ -1.56
SHMT2P34897 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.33□□□□□ -1.56
SHMT2P34897 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.33□□□□□ -1.56
SHMT2P34897 MTND6P2-201ENST00000512226 524 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 ATP5LP3-201ENST00000514223 304 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 BX510359.5-201ENST00000515651 304 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.33□□□□□ -1.56
SHMT2P34897 AC078878.1-201ENST00000539832 958 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.33□□□□□ -1.56
SHMT2P34897 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.33□□□□□ -1.56
SHMT2P34897 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.33□□□□□ -1.56
SHMT2P34897 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.33□□□□□ -1.56
SHMT2P34897 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 AC092944.2-201ENST00000605443 889 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 SAMMSON-209ENST00000641222 1100 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.33□□□□□ -1.56
SHMT2P34897 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.33□□□□□ -1.56
SHMT2P34897 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
SHMT2P34897 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHMT2P34897 MTCO1P11-201ENST00000429111 1528 ntBASIC5.33□□□□□ -1.56
SHMT2P34897 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.32□□□□□ -1.56
SHMT2P34897 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SHMT2P34897 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
SHMT2P34897 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.32□□□□□ -1.56
SHMT2P34897 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.32□□□□□ -1.56
SHMT2P34897 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.32□□□□□ -1.56
SHMT2P34897 AL358178.1-201ENST00000407698 397 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 SMC4P1-201ENST00000414479 527 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.32□□□□□ -1.56
SHMT2P34897 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.32□□□□□ -1.56
SHMT2P34897 AC105399.1-202ENST00000447303 205 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.32□□□□□ -1.56
SHMT2P34897 ABCC13-202ENST00000463099 3842 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 AL133445.1-201ENST00000467051 452 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 EIF3LP3-201ENST00000495197 822 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 MORF4L2P1-201ENST00000503761 858 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 AC011411.1-201ENST00000509592 876 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.32□□□□□ -1.56
SHMT2P34897 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.32□□□□□ -1.56
SHMT2P34897 SCARNA16.4-201ENST00000516956 187 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.32□□□□□ -1.56
SHMT2P34897 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.32□□□□□ -1.56
SHMT2P34897 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.32□□□□□ -1.56
SHMT2P34897 SUGT1P3-202ENST00000604259 383 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 AC007204.2-201ENST00000615022 616 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SHMT2P34897 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.32□□□□□ -1.56
SHMT2P34897 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 MTCO1P46-201ENST00000451639 1491 ntBASIC5.32□□□□□ -1.56
SHMT2P34897 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHMT2P34897 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 AC003985.2-201ENST00000562268 1669 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms