Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC138393.1-206ENST00000540997 1886 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 SSXP3-201ENST00000442971 1300 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 MIR640-201ENST00000385086 96 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 RNU6-316P-201ENST00000391027 107 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 VDAC2P1-201ENST00000399358 958 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 MIR1266-201ENST00000408125 84 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 PGBD4P8-201ENST00000412993 562 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC017078.1-201ENST00000416146 368 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 PAICSP7-201ENST00000419829 962 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 CNOT7P1-201ENST00000429006 852 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 PA2G4P6-201ENST00000438325 1197 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC002542.1-201ENST00000440683 193 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 MTND4P25-201ENST00000441039 533 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 RPL23AP76-201ENST00000441860 458 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 SETP11-201ENST00000473027 690 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 RPL7AP23-201ENST00000482625 776 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC074386.1-206ENST00000487102 761 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 RPL5P33-201ENST00000487833 905 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL024509.2-201ENST00000493462 493 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC091849.1-201ENST00000509920 121 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 RNU6-1308P-201ENST00000516817 103 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC244034.2-201ENST00000562504 509 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 RN7SL199P-201ENST00000578752 281 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 RN7SL656P-201ENST00000579044 281 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 RN7SL404P-201ENST00000582421 281 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC107982.3-201ENST00000584957 985 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC036176.3-201ENST00000602456 418 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL357078.3-201ENST00000607528 618 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC087241.4-201ENST00000612441 480 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC005899.6-201ENST00000620729 297 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AL596275.2-208ENST00000641192 594 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 LPAL2-203ENST00000454031 2498 ntBASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTCHD1Q96NR3 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
PTCHD1Q96NR3 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.34□□□□□ -1.39
PTCHD1Q96NR3 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.34□□□□□ -1.39
PTCHD1Q96NR3 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
PTCHD1Q96NR3 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
PTCHD1Q96NR3 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
PTCHD1Q96NR3 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.34□□□□□ -1.39
PTCHD1Q96NR3 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.34□□□□□ -1.39
PTCHD1Q96NR3 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms