Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-1263P-201ENST00000384601 106 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AL121977.1-201ENST00000401636 979 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 GAPDHP42-201ENST00000406848 981 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 RN7SKP125-201ENST00000410481 302 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 RN7SKP213-201ENST00000410746 298 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 RPS6P23-201ENST00000413224 722 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 NENFP1-201ENST00000419476 466 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 RPL12P3-201ENST00000440080 396 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 EEF1B2P5-201ENST00000444820 548 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC005532.2-201ENST00000467154 373 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 EIF1P7-201ENST00000487533 337 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC004453.1-201ENST00000487895 408 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AL358913.1-201ENST00000554342 121 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 SUGT1P3-202ENST00000604259 383 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC010245.2-201ENST00000606908 1167 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AL034546.1-201ENST00000623740 3693 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 AC005224.3-201ENST00000584683 2140 ntBASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HDDC3Q8N4P3 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RNU6-697P-201ENST00000363348 107 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RNA5SP30-201ENST00000365552 115 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RNU6-1320P-201ENST00000390838 107 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RNU6-1269P-201ENST00000391139 107 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 SLC35E1P1-201ENST00000419313 864 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AC106901.1-201ENST00000425086 698 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 MGAT2P2-201ENST00000427194 797 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RANP1-206ENST00000455094 651 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RNU6-599P-201ENST00000459383 107 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RNU6-1193P-201ENST00000459461 107 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 TRBV5-2-201ENST00000489095 273 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 DUTP1-201ENST00000493631 470 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 TOMM22P4-201ENST00000511318 336 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AC078899.1-201ENST00000521432 1185 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 HSPE1P2-201ENST00000554777 306 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AC011270.1-201ENST00000558606 583 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RNU6-368P-201ENST00000620928 107 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 RNU6-538P-201ENST00000622329 107 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 MFSD8-239ENST00000641590 2479 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 AC239868.2-201ENST00000564237 4527 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms