Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RN7SKP185-201ENST00000362813 326 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 GPS2P1-201ENST00000411761 986 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 OR10T1P-201ENST00000424327 947 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC113412.1-201ENST00000425840 504 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 RPS29P14-201ENST00000431518 171 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC006335.2-201ENST00000437993 330 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC064862.4-201ENST00000442180 334 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 RPL31P15-201ENST00000449770 338 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC112184.1-201ENST00000505179 312 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 RNU6-1334P-201ENST00000516032 105 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AL390334.1-201ENST00000556395 450 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC008521.2-201ENST00000591021 259 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC015712.7-201ENST00000615211 635 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC114786.1-201ENST00000512892 1415 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AL009179.1-201ENST00000406085 265 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 RN7SKP97-201ENST00000410966 333 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 OR2AT2P-201ENST00000413438 905 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 GAPDHP34-201ENST00000432112 823 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 Z84478.1-201ENST00000438230 1219 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 NANOGP9-201ENST00000439890 892 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 EEF1B2P6-201ENST00000445713 673 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 AP000547.1-201ENST00000454360 617 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 NXT1P1-201ENST00000458481 316 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 ENPP7P11-201ENST00000505915 627 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 RN7SKP253-201ENST00000516424 309 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC112191.2-201ENST00000522428 333 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 PMS2P3-207ENST00000529061 717 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 MIR3614-201ENST00000581261 86 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC087468.1-201ENST00000604365 630 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AL139407.1-201ENST00000613826 1175 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 RFC1-217ENST00000639695 867 ntTSL 5 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 YES1P1-201ENST00000418510 1628 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 AC011755.1-201ENST00000623763 2049 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.92□□□□□ -1.62
SKA3Q8IX90 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SKA3Q8IX90 OR4F13P-202ENST00000560066 2054 ntBASIC4.92□□□□□ -1.62
SKA3Q8IX90 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms