Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 MTCO1P11-201ENST00000429111 1528 ntBASIC5.22□□□□□ -1.57
SOX3P41225 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
SOX3P41225 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.22□□□□□ -1.57
SOX3P41225 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.21□□□□□ -1.57
SOX3P41225 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
SOX3P41225 ABCC13-202ENST00000463099 3842 ntBASIC5.21□□□□□ -1.57
SOX3P41225 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.21□□□□□ -1.57
SOX3P41225 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
SOX3P41225 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SOX3P41225 OR5T3-201ENST00000303059 1023 ntBASIC5.21□□□□□ -1.58
SOX3P41225 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SOX3P41225 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SOX3P41225 MTND4LP21-201ENST00000415303 295 ntBASIC5.21□□□□□ -1.58
SOX3P41225 SETP9-201ENST00000423837 832 ntBASIC5.21□□□□□ -1.58
SOX3P41225 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.21□□□□□ -1.58
SOX3P41225 AL121776.1-201ENST00000429337 372 ntBASIC5.21□□□□□ -1.58
SOX3P41225 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX3P41225 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX3P41225 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 AP000547.1-201ENST00000454360 617 ntBASIC5.21□□□□□ -1.58
SOX3P41225 AL356390.1-201ENST00000455684 397 ntBASIC5.21□□□□□ -1.58
SOX3P41225 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX3P41225 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX3P41225 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.21□□□□□ -1.58
SOX3P41225 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC5.21□□□□□ -1.58
SOX3P41225 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX3P41225 RPL7L1P4-201ENST00000513004 707 ntBASIC5.21□□□□□ -1.58
SOX3P41225 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX3P41225 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.21□□□□□ -1.58
SOX3P41225 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.21□□□□□ -1.58
SOX3P41225 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 MIR1273E-201ENST00000581165 102 ntBASIC5.21□□□□□ -1.58
SOX3P41225 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.21□□□□□ -1.58
SOX3P41225 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.21□□□□□ -1.58
SOX3P41225 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.21□□□□□ -1.58
SOX3P41225 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.21□□□□□ -1.58
SOX3P41225 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.21□□□□□ -1.58
SOX3P41225 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
SOX3P41225 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
SOX3P41225 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SOX3P41225 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
SOX3P41225 AC005261.2-201ENST00000593427 4258 ntBASIC5.2□□□□□ -1.58
SOX3P41225 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX3P41225 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX3P41225 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
SOX3P41225 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 AL589826.1-201ENST00000340697 249 ntBASIC5.2□□□□□ -1.58
SOX3P41225 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX3P41225 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SOX3P41225 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX3P41225 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX3P41225 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX3P41225 AL133173.1-201ENST00000423458 397 ntBASIC5.2□□□□□ -1.58
SOX3P41225 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX3P41225 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX3P41225 AC006335.2-201ENST00000437993 330 ntBASIC5.2□□□□□ -1.58
SOX3P41225 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX3P41225 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.2□□□□□ -1.58
SOX3P41225 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 MTND3P4-201ENST00000453537 303 ntBASIC5.2□□□□□ -1.58
SOX3P41225 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 DUTP7-201ENST00000507982 486 ntBASIC5.2□□□□□ -1.58
SOX3P41225 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX3P41225 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.2□□□□□ -1.58
SOX3P41225 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX3P41225 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX3P41225 SNRPGP1-201ENST00000553864 222 ntBASIC5.2□□□□□ -1.58
SOX3P41225 AGGF1P7-201ENST00000562369 913 ntBASIC5.2□□□□□ -1.58
SOX3P41225 MRPS21P7-201ENST00000566937 238 ntBASIC5.2□□□□□ -1.58
SOX3P41225 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX3P41225 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX3P41225 AC117490.2-201ENST00000610042 594 ntBASIC5.2□□□□□ -1.58
SOX3P41225 MIR6886-201ENST00000619864 61 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 147.2 ms