Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.97□□□□□ -1.45
MSX2P35548 SNORD56.4-201ENST00000363883 71 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 LDHAP5-201ENST00000394996 622 ntBASIC5.97□□□□□ -1.45
MSX2P35548 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 Y_RNA.604-201ENST00000410574 102 ntBASIC5.97□□□□□ -1.45
MSX2P35548 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 AL356320.2-201ENST00000417263 507 ntBASIC5.97□□□□□ -1.45
MSX2P35548 MTND4P3-201ENST00000417829 541 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 SETP9-201ENST00000423837 832 ntBASIC5.97□□□□□ -1.45
MSX2P35548 RPF2P1-201ENST00000424137 906 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AL354707.3-201ENST00000427308 331 ntBASIC5.97□□□□□ -1.45
MSX2P35548 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 MTCYBP39-201ENST00000437562 491 ntBASIC5.97□□□□□ -1.45
MSX2P35548 PTENP1-201ENST00000447117 1215 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AC104978.1-201ENST00000449387 391 ntBASIC5.97□□□□□ -1.45
MSX2P35548 OR52J1P-201ENST00000450596 932 ntBASIC5.97□□□□□ -1.45
MSX2P35548 MIR4422HG-201ENST00000451250 638 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.97□□□□□ -1.45
MSX2P35548 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 RPS16P9-201ENST00000477220 427 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AC004815.1-201ENST00000484185 331 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 AC090058.1-201ENST00000498788 435 ntBASIC5.97□□□□□ -1.45
MSX2P35548 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 RNU6-319P-201ENST00000516025 108 ntBASIC5.97□□□□□ -1.45
MSX2P35548 RNU5A-4P-201ENST00000516588 111 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AC105185.1-201ENST00000518705 535 ntBASIC5.97□□□□□ -1.45
MSX2P35548 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC5.97□□□□□ -1.45
MSX2P35548 AL132640.2-202ENST00000559732 614 ntBASIC5.97□□□□□ -1.45
MSX2P35548 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.97□□□□□ -1.45
MSX2P35548 AC007346.1-201ENST00000569208 867 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC5.97□□□□□ -1.45
MSX2P35548 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 WDR45BP1-201ENST00000583470 1029 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AC027229.1-201ENST00000583887 253 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX2P35548 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 AC009237.12-201ENST00000604755 742 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.97□□□□□ -1.45
MSX2P35548 AC005753.1-201ENST00000623837 618 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AC003992.1-201ENST00000635364 557 ntBASIC5.97□□□□□ -1.45
MSX2P35548 AC090582.1-201ENST00000636321 199 ntBASIC5.97□□□□□ -1.45
MSX2P35548 MTCO1P28-201ENST00000574177 1528 ntBASIC5.97□□□□□ -1.45
MSX2P35548 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
MSX2P35548 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
MSX2P35548 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX2P35548 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX2P35548 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
MSX2P35548 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC5.96□□□□□ -1.45
MSX2P35548 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
MSX2P35548 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.45
MSX2P35548 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
MSX2P35548 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
MSX2P35548 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSX2P35548 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX2P35548 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSX2P35548 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
MSX2P35548 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX2P35548 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX2P35548 SETP15-201ENST00000412724 337 ntBASIC5.96□□□□□ -1.46
MSX2P35548 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX2P35548 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX2P35548 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX2P35548 OR5BE1P-201ENST00000425977 939 ntBASIC5.96□□□□□ -1.46
MSX2P35548 AL138479.1-201ENST00000426913 484 ntBASIC5.96□□□□□ -1.46
MSX2P35548 MTCO2P16-201ENST00000436962 677 ntBASIC5.96□□□□□ -1.46
MSX2P35548 AL158214.1-201ENST00000444423 404 ntBASIC5.96□□□□□ -1.46
MSX2P35548 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX2P35548 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX2P35548 RN7SL456P-201ENST00000469290 295 ntBASIC5.96□□□□□ -1.46
MSX2P35548 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC5.96□□□□□ -1.46
MSX2P35548 AC079203.1-201ENST00000487972 404 ntBASIC5.96□□□□□ -1.46
MSX2P35548 MRPL49P1-201ENST00000505951 535 ntBASIC5.96□□□□□ -1.46
MSX2P35548 AC109927.2-201ENST00000506416 303 ntBASIC5.96□□□□□ -1.46
MSX2P35548 AC138938.1-201ENST00000515431 782 ntBASIC5.96□□□□□ -1.46
MSX2P35548 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSX2P35548 RN7SKP34-201ENST00000516142 244 ntBASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms