Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
COL6A3P12111 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.3□□□□□ -1.56
COL6A3P12111 MARF1-202ENST00000540441 7105 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.3□□□□□ -1.56
COL6A3P12111 NANOGP9-201ENST00000439890 892 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.3□□□□□ -1.56
COL6A3P12111 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.3□□□□□ -1.56
COL6A3P12111 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.3□□□□□ -1.56
COL6A3P12111 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.3□□□□□ -1.56
COL6A3P12111 AC090948.1-201ENST00000607464 549 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 AC006600.2-201ENST00000624834 2506 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.3□□□□□ -1.56
COL6A3P12111 AC007016.1-201ENST00000512110 244 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 OR4H6P-201ENST00000563771 921 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 AC020910.3-201ENST00000603701 874 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 AL359955.1-201ENST00000455242 3275 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
COL6A3P12111 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL6A3P12111 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.29□□□□□ -1.56
COL6A3P12111 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL6A3P12111 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL6A3P12111 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 HNRNPCP4-201ENST00000571636 900 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A3P12111 AP004147.1-201ENST00000505153 6314 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL6A3P12111 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
COL6A3P12111 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
COL6A3P12111 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 MIR554-201ENST00000384874 96 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 PTMAP2-201ENST00000397627 327 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A3P12111 RPL37P1-201ENST00000432310 284 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 GOT2P5-201ENST00000433995 546 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 RN7SL303P-201ENST00000469773 251 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 RN7SL244P-201ENST00000493405 297 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A3P12111 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.29□□□□□ -1.56
COL6A3P12111 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A3P12111 AC105129.1-201ENST00000560250 297 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 ARID1B-232ENST00000637904 5913 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
COL6A3P12111 ADAMTS3-201ENST00000286657 6409 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.29□□□□□ -1.56
COL6A3P12111 RGPD2-201ENST00000398146 6931 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 AL353795.3-201ENST00000624351 5702 ntBASIC5.29□□□□□ -1.56
COL6A3P12111 CACNB2-209ENST00000396576 4464 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A3P12111 RNA5SP428-201ENST00000365129 132 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 RPL7AP25-201ENST00000423357 805 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 AC023632.4-201ENST00000517783 191 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A3P12111 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC5.28□□□□□ -1.56
COL6A3P12111 AC004890.3-201ENST00000605566 1095 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 AC012442.3-202ENST00000636742 206 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 KIF13A-213ENST00000636847 5538 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 AC025031.4-201ENST00000621248 3271 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 AC069157.1-201ENST00000421749 137 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A3P12111 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.28□□□□□ -1.56
COL6A3P12111 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 AC096577.2-201ENST00000611455 153 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 ZBTB43-202ENST00000373464 5965 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 RBM12B-202ENST00000517700 6001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 AC110716.2-201ENST00000563865 3945 ntBASIC5.28□□□□□ -1.56
COL6A3P12111 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 C1QTNF7-204ENST00000429690 4464 ntAPPRIS P1 TSL 4 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms