Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 MIR548S-201ENST00000581352 82 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC245052.7-201ENST00000601161 359 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 RN7SKP299-201ENST00000606679 301 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AL590240.3-201ENST00000621416 943 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC067852.7-201ENST00000623270 535 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 AC092656.1-203ENST00000624134 423 ntBASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC39Q9UFE4 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AL592429.1-201ENST00000403909 1473 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 DDX18P5-201ENST00000534547 1306 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 Y_RNA.88-201ENST00000363029 99 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 RNU6-1242P-201ENST00000391052 103 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC019178.1-201ENST00000392337 440 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 FDPSP5-201ENST00000399474 1057 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 RANP6-201ENST00000413691 644 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 RBMX2P4-201ENST00000441256 376 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 PTGES3P5-201ENST00000455109 434 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AL355032.1-201ENST00000472981 438 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 RN7SL205P-201ENST00000490174 284 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC091965.3-201ENST00000506236 208 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AL512310.9-201ENST00000553311 948 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AP002906.1-201ENST00000603405 233 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AP003117.2-201ENST00000606010 545 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC093388.1-201ENST00000609166 430 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 SHQ1P1-201ENST00000437111 1544 ntBASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC39Q9UFE4 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC079753.1-201ENST00000623243 3868 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC105235.1-201ENST00000623208 1816 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC004023.1-201ENST00000561473 1744 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC139426.3-201ENST00000605648 2059 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 RNA5SP140-201ENST00000364524 92 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 RNU6-40P-201ENST00000384254 107 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 MORN2-202ENST00000409077 465 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 GPN3P1-201ENST00000423883 535 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 MTND4P20-201ENST00000424125 869 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms