Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 GNG2-208ENST00000554875 430 ntTSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC026124.2-201ENST00000621847 656 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AL121768.1-201ENST00000613917 2544 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC026523.2-201ENST00000625039 7739 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 RNA5SP500-201ENST00000364486 119 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AL031985.1-201ENST00000392713 418 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 VDAC2P1-201ENST00000399358 958 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 LYPLA1P3-201ENST00000402650 695 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 RNA5SP178-201ENST00000410380 128 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC073109.1-201ENST00000445066 978 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 RPL21P6-201ENST00000479171 504 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC022215.1-201ENST00000481770 362 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC108120.2-201ENST00000512973 294 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 snoU109.5-201ENST00000516231 132 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 IGKV2-4-201ENST00000523070 340 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC008521.2-201ENST00000591021 259 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC245128.3-201ENST00000594721 748 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 RN7SL544P-201ENST00000617232 284 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 RN7SL763P-201ENST00000620922 284 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC069234.4-201ENST00000621276 412 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 AC068769.1-201ENST00000474767 2426 ntBASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CHMP4AQ9BY43 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 CROT-204ENST00000442291 1993 ntTSL 5 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 RNU1-59P-201ENST00000364829 162 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 RN7SKP292-201ENST00000365522 317 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 SNORA17A-201ENST00000391185 133 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AMZ2P2-201ENST00000406819 1057 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 RN7SKP293-201ENST00000411389 296 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 RPA2P2-201ENST00000419698 796 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 SCAND3P1-201ENST00000439854 1060 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 MTCYBP12-201ENST00000440559 1134 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 CLIC4P1-201ENST00000453177 535 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 OR10D4P-201ENST00000525892 951 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AL390334.1-201ENST00000556395 450 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 MIR3614-201ENST00000581261 86 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AC027243.2-201ENST00000602530 724 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AC096553.1-201ENST00000605169 829 ntBASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms