Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 AL512413.1-201ENST00000606489 382 ntBASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 AC015871.5-202ENST00000623252 701 ntBASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC28BQ9BUN5 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC28BQ9BUN5 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC28BQ9BUN5 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC28BQ9BUN5 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC28BQ9BUN5 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.34□□□□□ -1.56
CCDC28BQ9BUN5 AL034370.1-201ENST00000397254 1590 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 CASC19-238ENST00000641523 1558 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AC003973.3-201ENST00000624863 2822 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 NFU1P1-201ENST00000413128 774 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 RFESDP1-201ENST00000422350 461 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AL136455.1-201ENST00000441083 1240 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 RN7SL273P-201ENST00000481561 299 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 RPS3AP15-201ENST00000483874 781 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 RPS12P31-201ENST00000491419 398 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AC007956.1-201ENST00000555623 542 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 HMGN1P26-201ENST00000558737 303 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 RNU6-84P-201ENST00000607737 102 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 AC007603.3-201ENST00000636915 979 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 OR4G1P-202ENST00000641173 1788 ntBASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC28BQ9BUN5 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AL672167.1-204ENST00000641875 3017 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 LINC01963-201ENST00000562038 3148 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 MIR551B-201ENST00000384984 96 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 RBBP4P5-201ENST00000398583 1266 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AL078599.1-201ENST00000402075 293 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AK4P4-201ENST00000419465 646 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AC113412.1-201ENST00000425840 504 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 NFYAP1-201ENST00000431953 972 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 RPSAP32-201ENST00000432681 526 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 PNKDP1-201ENST00000435914 430 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 ARL4AP1-201ENST00000503220 705 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 NACAP5-201ENST00000509863 636 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 157.8 ms