Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AL033528.1-201ENST00000453780 140 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC026336.1-201ENST00000466577 351 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 RN7SL815P-201ENST00000470970 290 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC004924.1-201ENST00000480160 781 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC099521.1-201ENST00000482557 334 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 RPL9P6-201ENST00000492764 598 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC005912.1-201ENST00000495392 255 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 RN7SL445P-201ENST00000495609 293 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC097263.1-201ENST00000496795 606 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 OR7E99P-201ENST00000505750 922 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AP002026.1-204ENST00000506454 749 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC024451.1-201ENST00000508013 779 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 NDUFB4P2-201ENST00000509515 391 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC111194.1-201ENST00000509711 422 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC092336.1-201ENST00000510562 415 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC008013.2-201ENST00000537555 348 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC084880.4-201ENST00000538405 577 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC006205.2-201ENST00000538943 373 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 HIGD1AP9-201ENST00000550710 279 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 BMS1P15-201ENST00000554269 1141 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC013283.1-201ENST00000557282 492 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC092868.2-201ENST00000558749 497 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC137800.2-201ENST00000574375 120 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 MIR4675-201ENST00000577898 77 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 MIR548S-201ENST00000581352 82 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AP000403.1-201ENST00000603349 851 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC069234.5-201ENST00000611056 416 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC099654.13-201ENST00000639774 207 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC020978.8-201ENST00000571975 3022 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 PROS2P-201ENST00000474651 1951 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 BX284613.1-201ENST00000452221 1641 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 OR2T10-201ENST00000330500 1049 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 SNORA73B-201ENST00000363217 204 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RNA5SP238-201ENST00000365464 120 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 U8.14-201ENST00000390843 143 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RPL24P7-201ENST00000399435 453 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 YWHAZP6-201ENST00000399764 738 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 VN1R8P-201ENST00000407739 893 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 SOD1P1-201ENST00000407803 440 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 PRELID3BP11-201ENST00000414230 479 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms