Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.38□□□□□ -1.55
SHMT2P34897 RN7SL51P-201ENST00000468230 285 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SHMT2P34897 RPS17P5-201ENST00000498293 408 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.38□□□□□ -1.55
SHMT2P34897 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.38□□□□□ -1.55
SHMT2P34897 ASNSP4-201ENST00000511103 447 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 RNU6-964P-201ENST00000516524 69 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 RN7SKP99-201ENST00000517028 307 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.38□□□□□ -1.55
SHMT2P34897 AC122688.1-201ENST00000541494 223 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.38□□□□□ -1.55
SHMT2P34897 MIR4660-201ENST00000583549 74 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 AC010503.3-201ENST00000594355 540 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 AL022394.1-201ENST00000606979 292 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.38□□□□□ -1.55
SHMT2P34897 MIR6862-1-201ENST00000613016 70 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 MIR6862-2-201ENST00000614755 70 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 AL162574.1-201ENST00000615702 950 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 AC132068.1-201ENST00000623805 459 ntBASIC5.38□□□□□ -1.55
SHMT2P34897 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SHMT2P34897 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.38□□□□□ -1.55
SHMT2P34897 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.38□□□□□ -1.55
SHMT2P34897 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SHMT2P34897 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.38□□□□□ -1.55
SHMT2P34897 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
SHMT2P34897 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SHMT2P34897 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.37□□□□□ -1.55
SHMT2P34897 AC104964.3-201ENST00000606115 2860 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SHMT2P34897 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.37□□□□□ -1.55
SHMT2P34897 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SHMT2P34897 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.37□□□□□ -1.55
SHMT2P34897 RNA5SP132-201ENST00000364725 118 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 AL133482.1-201ENST00000415988 498 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.37□□□□□ -1.55
SHMT2P34897 RIMKLBP2-201ENST00000424737 654 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 AL390119.1-201ENST00000440329 312 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 AC019185.1-201ENST00000442718 389 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.37□□□□□ -1.55
SHMT2P34897 AC100832.1-201ENST00000471945 383 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 RN7SL583P-201ENST00000475692 287 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 EIF1P7-201ENST00000487533 337 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.37□□□□□ -1.55
SHMT2P34897 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.37□□□□□ -1.55
SHMT2P34897 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.37□□□□□ -1.55
SHMT2P34897 OR5AM1P-201ENST00000532136 1032 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SHMT2P34897 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.37□□□□□ -1.55
SHMT2P34897 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.37□□□□□ -1.55
SHMT2P34897 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.37□□□□□ -1.55
SHMT2P34897 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.37□□□□□ -1.55
SHMT2P34897 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 AL118522.2-201ENST00000616045 615 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 MIR8080-201ENST00000622224 89 ntBASIC5.37□□□□□ -1.55
SHMT2P34897 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.37□□□□□ -1.55
SHMT2P34897 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.37□□□□□ -1.55
SHMT2P34897 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SHMT2P34897 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.37□□□□□ -1.55
SHMT2P34897 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.37□□□□□ -1.55
SHMT2P34897 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SHMT2P34897 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SHMT2P34897 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.37□□□□□ -1.55
SHMT2P34897 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.37□□□□□ -1.55
SHMT2P34897 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
SHMT2P34897 AC092376.2-201ENST00000622621 4116 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SHMT2P34897 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.36□□□□□ -1.55
SHMT2P34897 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHMT2P34897 AC010266.2-201ENST00000564741 3255 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 AC006206.1-201ENST00000544842 3387 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SHMT2P34897 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHMT2P34897 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.36□□□□□ -1.55
SHMT2P34897 AC007161.1-204ENST00000423039 460 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.36□□□□□ -1.55
SHMT2P34897 HMGN2P27-201ENST00000427352 270 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 AC012075.1-201ENST00000436549 580 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.36□□□□□ -1.55
SHMT2P34897 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.36□□□□□ -1.55
SHMT2P34897 IGBP1P3-201ENST00000447449 1000 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.36□□□□□ -1.55
SHMT2P34897 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.36□□□□□ -1.55
SHMT2P34897 PSAT1P4-201ENST00000466500 526 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 RN7SL188P-201ENST00000469842 285 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.36□□□□□ -1.55
SHMT2P34897 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
SHMT2P34897 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.36□□□□□ -1.55
SHMT2P34897 RPL7L1P4-201ENST00000513004 707 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 SEPT10P1-201ENST00000517342 1162 ntBASIC5.36□□□□□ -1.55
SHMT2P34897 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.36□□□□□ -1.55
SHMT2P34897 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms