Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC7.25□□□□□ -1.25
HMGB1P09429 RNU4ATAC-201ENST00000580972 127 ntBASIC7.25□□□□□ -1.25
HMGB1P09429 AP005136.2-201ENST00000583253 1049 ntBASIC7.25□□□□□ -1.25
HMGB1P09429 RPSAP75-201ENST00000605848 301 ntBASIC7.25□□□□□ -1.25
HMGB1P09429 AL359513.1-201ENST00000614364 557 ntBASIC7.25□□□□□ -1.25
HMGB1P09429 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
HMGB1P09429 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.25□□□□□ -1.25
HMGB1P09429 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
HMGB1P09429 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
HMGB1P09429 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HMGB1P09429 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.25□□□□□ -1.25
HMGB1P09429 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HMGB1P09429 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
HMGB1P09429 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
HMGB1P09429 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
HMGB1P09429 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
HMGB1P09429 AC016583.1-201ENST00000624221 2431 ntBASIC7.25□□□□□ -1.25
HMGB1P09429 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 GDA-209ENST00000545168 5362 ntTSL 2 BASIC7.24□□□□□ -1.25
HMGB1P09429 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC7.24□□□□□ -1.25
HMGB1P09429 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.24□□□□□ -1.25
HMGB1P09429 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 AC109446.4-201ENST00000623235 2755 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AL353743.4-201ENST00000422653 1547 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
HMGB1P09429 RNU105B-201ENST00000364478 208 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 RNU6-796P-201ENST00000391086 107 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 ATF1P1-201ENST00000406040 927 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 RNA5SP156-201ENST00000410250 110 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 EIF4A1P3-201ENST00000411521 244 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AC019070.1-201ENST00000415008 1024 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC7.24□□□□□ -1.25
HMGB1P09429 AC023128.2-201ENST00000420880 1223 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 RPL7AP51-201ENST00000422016 760 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC7.24□□□□□ -1.25
HMGB1P09429 AC073069.1-201ENST00000428657 441 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 AL731534.1-201ENST00000434711 269 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC7.24□□□□□ -1.25
HMGB1P09429 CLNS1AP1-201ENST00000435954 682 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AC074367.1-201ENST00000438685 1125 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.24□□□□□ -1.25
HMGB1P09429 RPL23AP40-201ENST00000487630 390 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 RPL12P30-201ENST00000488389 499 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
HMGB1P09429 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC7.24□□□□□ -1.25
HMGB1P09429 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC7.24□□□□□ -1.25
HMGB1P09429 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC7.24□□□□□ -1.25
HMGB1P09429 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC7.24□□□□□ -1.25
HMGB1P09429 FTH1P11-201ENST00000517577 551 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC7.24□□□□□ -1.25
HMGB1P09429 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC7.24□□□□□ -1.25
HMGB1P09429 OR5AK3P-201ENST00000527486 1297 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC7.24□□□□□ -1.25
HMGB1P09429 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC7.24□□□□□ -1.25
HMGB1P09429 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC7.24□□□□□ -1.25
HMGB1P09429 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC7.24□□□□□ -1.25
HMGB1P09429 MIR744-201ENST00000578242 98 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AC090312.1-201ENST00000580637 348 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC7.24□□□□□ -1.25
HMGB1P09429 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC7.24□□□□□ -1.25
HMGB1P09429 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC7.24□□□□□ -1.25
HMGB1P09429 AC011374.2-201ENST00000607135 526 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AL512506.1-201ENST00000613918 449 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 AC024884.1-201ENST00000620583 399 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC7.24□□□□□ -1.25
HMGB1P09429 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC7.24□□□□□ -1.25
HMGB1P09429 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
HMGB1P09429 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HMGB1P09429 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
HMGB1P09429 DNM1P47-203ENST00000571780 12667 ntBASIC7.24□□□□□ -1.25
HMGB1P09429 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC7.23□□□□□ -1.25
HMGB1P09429 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC7.23□□□□□ -1.25
HMGB1P09429 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC7.23□□□□□ -1.25
HMGB1P09429 MIR1303-201ENST00000408625 86 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 RN7SKP166-201ENST00000410812 305 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 UBE2V1P11-201ENST00000411559 285 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 RPS7P8-201ENST00000418311 581 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC7.23□□□□□ -1.25
HMGB1P09429 RPS15AP30-201ENST00000420976 390 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 PNRC2P1-201ENST00000423940 420 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC7.23□□□□□ -1.25
HMGB1P09429 AC005189.1-201ENST00000431286 310 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 AL512593.1-201ENST00000444758 779 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 CYCSP53-201ENST00000455540 265 ntBASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms